| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1440443 | 16 (0.440) | 6 (0.180) | 6/240 | 2.9 | 28.5% | coding (342/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 15 (0.440) | coding (321/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
TAAATGGCACGCGGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAACGATGTTGAAAGGGCACCCGTCTGCAAAGCGCCATGCACGGTA > NC_000913/1440295‑1440590 | tAAATGGCACGCGGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGT > 1:83732‑M1/1‑149 (MQ=255) cgcaaatcgcgGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCAtgtgt > 5:148075/8‑149 (MQ=255) aaTGGCACGCGGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCAtgtgt < 4:14025/149‑1 (MQ=255) aCGCGGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcac > 3:61614‑M1/1‑141 (MQ=255) ggCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTa < 2:83732/149‑1 (MQ=255) gTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTac > 8:149749‑M2/1‑147 (MQ=255) gATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcacgtaccgttgccacacatgca < 4:61614‑M1/149‑29 (MQ=255) aTTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAg < 6:148075/149‑1 (MQ=255) aTTTGCGAAATGAGAGAAAAGTCGTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGAGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcacgtaccgttgccacacatgcac < 8:134869‑M1/149‑30 (MQ=255) gCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcacgtaccgttgccacacatgcactct < 5:69346‑M1/148‑33 (MQ=255) gcACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcacgtaccgttgccacacat > 1:67946‑M1/1‑75 (MQ=255) gcACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTagcggcacgtaccgttgccacacat < 2:67946‑M1/100‑26 (MQ=255) cacacaACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACa > 7:25472/1‑138 (MQ=255) cacacaACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACa < 8:25472/138‑1 (MQ=255) cacacaACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGat < 3:39716/148‑1 (MQ=255) acaacaTCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTacatgca > 2:130428‑M2/1‑92 (MQ=255) acaacaTCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTacatgca < 1:130428‑M2/99‑8 (MQ=255) aTCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATcagcag < 2:143127/149‑1 (MQ=255) tCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATcagcag > 6:47821/1‑148 (MQ=255) aaCCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAAccc > 1:34569/1‑149 (MQ=255) ccGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGc > 1:12186/1‑149 (MQ=255) gcACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGt > 6:17029/1‑148 (MQ=255) ccGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAAc < 5:17029/149‑1 (MQ=255) aaCGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAACGATGtt > 8:71751/1‑148 (MQ=255) agagTGCATGTGTGGCAACGGTACGTGCCGCTacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgcagcaaacgtccaggaagcgcaagactttgctctcatttcgc < 5:69346‑M2/148‑117 (MQ=255) gTGCATGTGTGGCAACGGTACGTGCCGCTacatgcactctctatttttggcgatcattccgacgttatggcggtgctccagacgggttgcgcgatgttgtgtgcagcaaacgtccaggaagcgcacgacttttctctcatttcgcaaat < 8:134869‑M2/149‑121 (MQ=255) tGCATGTagcggcacgtaccgttgccacacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgt > 2:130428‑M1/1‑7 (MQ=255) tGCATGTagcggcacgtaccgttgccacacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgt < 1:130428‑M1/99‑93 (MQ=255) tGCATGTGTGGCAACGGTACGTGCCGCTacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgcagcaaacgtccaggaagcgcaagactttgctctcatttcgcaaatc < 4:61614‑M2/149‑122 (MQ=255) aTGTGTGGCAACGGTACGTGCCGCTacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgc < 2:67946‑M2/100‑76 (MQ=255) aTGTGTGGCAACGGTACGTGCCGCTacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgc > 1:67946‑M2/1‑25 (MQ=255) tgtgtgGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAACGATGTTGAAAGGGCACCCGTCTGCAAAGCGCCATGCACGGt < 2:12186/149‑1 (MQ=255) gTagcggcacgtaccgttgccacacatgcactctctatttttggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgcagcaaacgtccaggaagcgcaagactttgctctcatttcgcaaatcgcgac > 8:149749‑M1/1‑2 (MQ=255) tgtgGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAACGATGTTGAAAGGGCACCCGTCTGCAAAGCGCCATGCACGGTa < 7:71751/148‑1 (MQ=255) | TAAATGGCACGCGGCTTTTCAGCGTCGCGATTTGCGAAATGAGAGCAAAGTCTTGCGCTTCCTGGACGTTTGCTGCACACAACATCGCGCAACCCGTCTGGCGCACCGCCATAACGTCGGAATGATCGCCAAAAATAGAGAGTGCATGTGTGGCAACGGTACGTGCCGCTACATGCAGGACAAACGGTGTTAGTTCGCCTGCCAGTTTGTACAGCGTCGGGATCATCAGCAGCAAACCCTGCGATGACGTAAACGATGTTGAAAGGGCACCCGTCTGCAAAGCGCCATGCACGGTA > NC_000913/1440295‑1440590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |