New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2019164	39 (0.830)	9 (0.200)	8/254	4.2	20.0%	coding (779/1128 nt)	fliK	flagellar hook‑length control protein
	?	NC_000913	= 2019170	35 (0.780)					coding (785/1128 nt)	fliK	flagellar hook‑length control protein
Rejected: Coverage evenness skew score above cutoff.

CCAGCCCGCTAATCACTCCACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGC  >  NC_000913/2019017‑2019307                                                                                                                                                    |                                                                                                                                                ccAGCCCGCTAATCACTCCACACCAGACACAGCCACTGCCCCCCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGCGCAACAAAGTGCagag                                                                                                                                                >  6:141817/1‑149 (MQ=255)  cAGCCCGCTAATCACTCCACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGt                                                                                                                                               <  5:22096/149‑1 (MQ=255)   aGCCCGCTAATCACTCCACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGtt                                                                                                                                              >  2:47982/1‑149 (MQ=255)                   cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCa                                                                                                                               <  1:213997/148‑1 (MQ=255)                   cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAg                                                                                                                              >  2:221124/1‑149 (MQ=255)                   cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAg                                                                                                                              >  2:97325/1‑149 (MQ=255)                     cacCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                            <  3:155141/149‑1 (MQ=255)                          gACACAGCCACTGCCCACCGTCGCCGCACCTGTTTCGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                       <  3:116214/149‑1 (MQ=255)                              caGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTg                                                                                                                    >  8:108948/1‑148 (MQ=255)                                gCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAg                                                                                                                 <  1:221124/149‑1 (MQ=255)                                 ccACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGt                                                                                                                <  1:18551/149‑1 (MQ=255)                                   aCTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                       <  7:160581/140‑1 (MQ=255)                                   aCTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                       >  8:160581/1‑140 (MQ=255)                                       cccACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAAt                                                                                                          >  1:154009/1‑149 (MQ=255)                                         cACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                            <  4:121750/129‑1 (MQ=255)                                         cACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                            >  3:121750/1‑129 (MQ=255)                                           ccGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTcc                                                                                                      <  2:154009/149‑1 (MQ=255)                                             gTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGtt                                                                                                                                              <  1:130103/107‑1 (MQ=255)                                             gTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGtt                                                                                                                                              >  2:130103/1‑107 (MQ=255)                                                   gcACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGt                                                                                              <  1:187506/149‑1 (MQ=255)                                                                gTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAg                                                                                 <  5:14777/149‑1 (MQ=255)                                                                       gCTGGGTTCTCACGAATGGCAACAATCATTAAGGCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGTTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCaaa                                                                          <  2:144038/149‑1 (MQ=255)                                                                                       tGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAcc                                                          <  1:47982/149‑1 (MQ=255)                                                                                                  aTTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATg                                               <  1:97325/149‑1 (MQ=255)                                                                                                         cAGCATATTTCGCTGTTCACCCGCCA‑GGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGcgcc                                       >  1:15073/1‑149 (MQ=255)                                                                                                              tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                   <  7:108948/149‑1 (MQ=255)                                                                                                              tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                   >  2:103812/1‑149 (MQ=255)                                                                                                              tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                   <  1:103812/149‑1 (MQ=255)                                                                                                               atTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCt                                  >  7:129552/1‑149 (MQ=255)                                                                                                                 ttCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTg                                 >  4:180147/1‑148 (MQ=255)                                                                                                                           aCCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATc                                                                        >  4:81180/1‑99 (MQ=255)                                                                                                                           aCCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATc                                                                        <  3:81180/99‑1 (MQ=255)                                                                                                                           aCCCGCCA‑GGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCt                      <  2:15073/148‑1 (MQ=255)                                                                                                                             ccGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGc                    >  8:177230/1‑149 (MQ=255)                                                                                                                             ccGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGc                    >  2:67689/1‑149 (MQ=255)                                                                                                                                         acaaAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGcgca        >  2:4034/1‑149 (MQ=255)                                                                                                                                               tGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGc  >  5:186340/1‑149 (MQ=255)                                                                                                                                                gCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAc                                                           <  6:117275/91‑1 (MQ=255)                                                                                                                                                gCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAc                                                           >  5:117275/1‑91 (MQ=255)                                                                                                                                                    |                                                                                                                                                CCAGCCCGCTAATCACTCCACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGC  >  NC_000913/2019017‑2019307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.