New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 201916439 (0.830)9 (0.200) 8/254 4.2 20.0% coding (779/1128 nt) fliK flagellar hook‑length control protein
?NC_000913 = 2019170 35 (0.780)coding (785/1128 nt) fliK flagellar hook‑length control protein
Rejected: Coverage evenness skew score above cutoff.

CACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGCTGGCCGAAA  >  NC_000913/2019035‑2019316
                                                                                                                                       |                                                                                                                                                  
cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCa                                                                                                                                        <  1:213997/148‑1 (MQ=255)
cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAg                                                                                                                                       >  2:97325/1‑149 (MQ=255)
cacaCCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAg                                                                                                                                       >  2:221124/1‑149 (MQ=255)
  cacCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                                     <  3:155141/149‑1 (MQ=255)
       gACACAGCCACTGCCCACCGTCGCCGCACCTGTTTCGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                                <  3:116214/149‑1 (MQ=255)
           caGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTg                                                                                                                             >  8:108948/1‑148 (MQ=255)
             gCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAg                                                                                                                          <  1:221124/149‑1 (MQ=255)
              ccACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGt                                                                                                                         <  1:18551/149‑1 (MQ=255)
                aCTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                                >  8:160581/1‑140 (MQ=255)
                aCTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAg                                                                                                                                <  7:160581/140‑1 (MQ=255)
                    cccACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAAt                                                                                                                   >  1:154009/1‑149 (MQ=255)
                      cACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                                     <  4:121750/129‑1 (MQ=255)
                      cACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGa                                                                                                                                     >  3:121750/1‑129 (MQ=255)
                        ccGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTcc                                                                                                               <  2:154009/149‑1 (MQ=255)
                                gcACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGt                                                                                                       <  1:187506/149‑1 (MQ=255)
                                             gTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAg                                                                                          <  5:14777/149‑1 (MQ=255)
                                                    gCTGGGTTCTCACGAATGGCAACAATCATTAAGGCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGTTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCaaa                                                                                   <  2:144038/149‑1 (MQ=255)
                                                                    tGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAcc                                                                   <  1:47982/149‑1 (MQ=255)
                                                                               aTTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATg                                                        <  1:97325/149‑1 (MQ=255)
                                                                                      cAGCATATTTCGCTGTTCACCCGCCA‑GGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGcgcc                                                >  1:15073/1‑149 (MQ=255)
                                                                                           tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                            <  7:108948/149‑1 (MQ=255)
                                                                                           tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                            >  2:103812/1‑149 (MQ=255)
                                                                                           tatTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGccc                                            <  1:103812/149‑1 (MQ=255)
                                                                                            atTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCt                                           >  7:129552/1‑149 (MQ=255)
                                                                                              ttCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTg                                          >  4:180147/1‑148 (MQ=255)
                                                                                                        aCCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATc                                                                                 <  3:81180/99‑1 (MQ=255)
                                                                                                        aCCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATc                                                                                 >  4:81180/1‑99 (MQ=255)
                                                                                                        aCCCGCCA‑GGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCt                               <  2:15073/148‑1 (MQ=255)
                                                                                                          ccGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGc                             >  2:67689/1‑149 (MQ=255)
                                                                                                          ccGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGc                             >  8:177230/1‑149 (MQ=255)
                                                                                                                      acaaAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGcgca                 >  2:4034/1‑149 (MQ=255)
                                                                                                                            tGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGc           >  5:186340/1‑149 (MQ=255)
                                                                                                                             gCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAc                                                                    >  5:117275/1‑91 (MQ=255)
                                                                                                                             gCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCAc                                                                    <  6:117275/91‑1 (MQ=255)
                                                                                                                                      cGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGCTGGCCGaaa  <  7:177230/148‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                                  
CACACCAGACACAGCCACTGCCCACCGTCGCCGCACCTGTTTTGAGTGCACCGCTGGGTTCTCACGAATGGCAACAATCATTAAGCCAGCATATTTCGCTGTTCACCCGCCAGGGGCAACAAAGTGCAGAGTTGCGTCTGCACCCGCAGGATTTAGGTGAAGTGCAAATCTCCCTCAAAGTGGATGATAACCAGGCGCAAATCCAGATGGTTTCACCGCATCAGCATGTACGCGCCGCCCTGGAAGCAGCGCTGCCGGTACTGCGCACGCAGCTGGCCGAAA  >  NC_000913/2019035‑2019316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.