New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2940113 =30 (0.840)7 (0.210) 5/234 3.7 19.6% intergenic (+14/+30) fucR/rlmM l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
?NC_000913 2940137 = 29 (0.860)intergenic (+38/+6) fucR/rlmM l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGT  >  NC_000913/2939983‑2940257
                                                                                                                                  |                                                                                                                                                
ttgattgaTAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGcccc                                                                                                                                >  5:178297/1‑149 (MQ=255)
      gatAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCtt                                                                                                                          >  1:86995/1‑149 (MQ=255)
        tAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGc                                                                                                                        >  8:95983/1‑149 (MQ=255)
          aaaGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCt                                                                                                                      <  1:20363/149‑1 (MQ=255)
             gTAAATTTAATCGTTCAGGGGAAGCCTGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGcc                                                                                                                                              >  3:145380/1‑122 (MQ=255)
             gTAAATTTAATCGTTCAGGGGAAGCCTGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGcc                                                                                                                                              <  4:145380/122‑1 (MQ=255)
                       tCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc                                                                                                         <  6:178297/149‑1 (MQ=255)
                                    gCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGAccaccc                                                                                            >  5:123227/1‑149 (MQ=255)
                                                                   acaTTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCg                                                             >  4:16649/1‑149 (MQ=255)
                                                                                  aGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAgacga                                                                                                                                      <  6:152359/61‑1 (MQ=255)
                                                                                  aGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAgacga                                                                                                                                      >  5:152359/1‑61 (MQ=255)
                                                                                      ccAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGt                                                            <  6:70291/131‑1 (MQ=255)
                                                                                      ccAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGt                                                            >  5:70291/1‑131 (MQ=255)
                                                                                       cAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGa                                         >  5:68177/1‑149 (MQ=255)
                                                                                            tGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACaa                                    <  7:95983/149‑1 (MQ=255)
                                                                                              cAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGcc                                                                                                                       <  5:9148/64‑1 (MQ=255)
                                                                                              cAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGcc                                                                                                                       >  6:9148/1‑64 (MQ=255)
                                                                                                  ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc                                                                                                         >  4:106975/1‑74 (MQ=255)
                                                                                                  ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc                                                                                                         <  3:106975/74‑1 (MQ=255)
                                                                                                  ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGcga                                                                                                     <  4:35853/78‑1 (MQ=255)
                                                                                                  ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGcga                                                                                                     >  3:35853/1‑78 (MQ=255)
                                                                                                     tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGa                                                                      <  7:41774/106‑1 (MQ=255)
                                                                                                     tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGa                                                                      >  8:41774/1‑106 (MQ=255)
                                                                                                         gTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCAGACGt                                                                   >  1:22646/1‑105 (MQ=255)
                                                                                                         gTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCAGACGt                                                                   <  2:22646/105‑1 (MQ=255)
                                                                                                            aCAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTa                                                                                                                  >  7:71664/1‑55 (MQ=255)
                                                                                                            aCAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTa                                                                                                                  <  8:71664/55‑1 (MQ=255)
                                                                                                                   gACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCAt             >  4:103197/1‑149 (MQ=255)
                                                                                                                        aaaGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATg        >  2:84203/1‑149 (MQ=255)
                                                                                                                              tAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGt  <  6:123227/149‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                                
TTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGT  >  NC_000913/2939983‑2940257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.