| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2940113 = | 30 (0.840) | 7 (0.210) | 5/234 | 3.7 | 19.6% | intergenic (+14/+30) | fucR/rlmM | l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | 2940137 = | 29 (0.860) | intergenic (+38/+6) | fucR/rlmM | l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCTGTGCCTGAA > NC_000913/2939989‑2940276 | gatAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCtt > 1:86995/1‑149 (MQ=255) tAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGc > 8:95983/1‑149 (MQ=255) aaaGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCt < 1:20363/149‑1 (MQ=255) tCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc < 6:178297/149‑1 (MQ=255) gCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGAccaccc > 5:123227/1‑149 (MQ=255) acaTTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCg > 4:16649/1‑149 (MQ=255) ccAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGt < 6:70291/131‑1 (MQ=255) ccAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGt > 5:70291/1‑131 (MQ=255) cAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGa > 5:68177/1‑149 (MQ=255) tGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACaa < 7:95983/149‑1 (MQ=255) cAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGcc > 6:9148/1‑64 (MQ=255) cAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGcc < 5:9148/64‑1 (MQ=255) ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc < 3:106975/74‑1 (MQ=255) ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc > 4:106975/1‑74 (MQ=255) ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGcga < 4:35853/78‑1 (MQ=255) ttcttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGcga > 3:35853/1‑78 (MQ=255) tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGa < 7:41774/106‑1 (MQ=255) tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGa > 8:41774/1‑106 (MQ=255) gTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCAGACGt < 2:22646/105‑1 (MQ=255) gTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCAGACGt > 1:22646/1‑105 (MQ=255) aCAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTa > 7:71664/1‑55 (MQ=255) aCAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTa < 8:71664/55‑1 (MQ=255) gACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCAt > 4:103197/1‑149 (MQ=255) aaaGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATg > 2:84203/1‑149 (MQ=255) tAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGt < 6:123227/149‑1 (MQ=255) gacgacGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCtgt < 3:16649/149‑1 (MQ=255) gCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCtgt < 4:21582/143‑1 (MQ=255) gCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCtgt > 3:21582/1‑143 (MQ=255) ccccGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCTGTGCCTGaa < 3:103197/149‑1 (MQ=255) | GATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCATCAAGCTGTGCCTGAA > NC_000913/2939989‑2940276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |