BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,309,624	Δ3,364 bp		[alsA]–[alsR]	[alsA], alsB, [alsR]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4309624	4312987	3364	144 [1]	[1] 147	[alsA]–[alsR]	[alsA],alsB,[alsR]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4309623	1 (0.010)	138 (1.190)	87/272	0.2	99.3%	coding (1358/1533 nt)	alsA	D‑allose ABC transporter ATPase
*	?	NC_000913	4312988 =	1 (0.010)	138 (1.190)	87/272	0.2	99.3%	coding (4/891 nt)	alsR	d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR

Only 100 of 144 total aligned reads displayed.

TCTCCTCTTCGCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCGCATCACTTTGTAAATTTCGGCTTTCGCGCCAACGTCGATGCCGCGGGTAGGTTCATCGAAAATAATCACTTCCGGGCAACAGCACAGCCATTTGGAGATCAGGACTTTCTGCTGATTTCCCCCGGAGAGTTCGGTGATATTCTGGTT  >  NC_000913/4309477‑4309771

   cctcTTCGCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcat                                                                                                                                                  >  2:513545‑M1/1‑144 (MQ=255)

    ctctTCGCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatca                                                                                                                                                <  4:57002‑M1/149‑7 (MQ=255)

     tctTCGCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcac                                                                                                                                               >  2:342626‑M1/1‑142 (MQ=255)

          gCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttct                                                                                                                                          <  8:390148‑M1/149‑13 (MQ=255)

            tCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctct                                                                                                                                        >  1:61709‑M1/1‑135 (MQ=255)

            tCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctct                                                                                                                                        >  8:13‑M1/1‑135 (MQ=255)

              aTGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatc                                                                                                                                                 >  8:228161‑M1/1‑133 (MQ=255)

              aTGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatc                                                                                                                                                 <  7:228161‑M1/138‑6 (MQ=255)

               tGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgt                                                                                                                                     >  2:73801‑M1/1‑132 (MQ=255)

                 tCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtcc                                                                                                                                   >  8:211660‑M1/1‑130 (MQ=255)

                 tCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtc                                                                                                                                    <  7:78730‑M1/148‑19 (MQ=255)

                   aTCGCGATTCGTCAGTATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGAGGTCGCAGACGGTGATAATTTCAGGTAGTTCATATGACACCATCAGGATGACTTTTCCGTCGTCCGACAGTTGGCGCATCACTTTGTAAATTTCgg                                                                                                                                 <  3:315976/149‑1 (MQ=255)

                   aTCGCGATTCGTCAGGATATGCGTCAGTCGTCCTTCGCAGATCTCGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtcctt                                                                                                                                 <  4:25939‑M1/149‑22 (MQ=255)

                    tCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtcctt                                                                                                                                 >  6:136190‑M1/1‑127 (MQ=255)

                      gcgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaa                                                                                                                              >  2:503960‑M1/1‑125 (MQ=255)

                      gcgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaa                                                                                                                              <  3:228261‑M1/149‑25 (MQ=255)

                      gcgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaa                                                                                                                              >  6:298804‑M1/1‑125 (MQ=255)

                      gcgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttga                                                                                                                               <  7:211660‑M1/148‑24 (MQ=255)

                       cgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaat                                                                                                                             <  1:342626‑M1/149‑26 (MQ=255)

                       cgATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtc                                                                                                                                    >  5:19036‑M1/1‑124 (MQ=255)

                        gATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaatt                                                                                                                            >  8:87384‑M1/1‑123 (MQ=255)

                         aTTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattg                                                                                                                           <  2:230263‑M1/149‑28 (MQ=255)

                         aTTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaatt                                                                                                                            >  2:222797‑M1/1‑122 (MQ=255)

                          ttCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattga                                                                                                                          <  3:438680‑M1/149‑29 (MQ=255)

                            cGTCATGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaa                                                                                                                         <  7:390253‑M1/148‑30 (MQ=255)

                             gTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtc                                                                                                                                    >  3:13843‑M1/1‑118 (MQ=255)

                             gTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtc                                                                                                                                    <  4:13843‑M1/136‑19 (MQ=255)

                              tCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagac                                                                                                                      <  6:237332‑M1/149‑33 (MQ=255)

                              tCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagac                                                                                                                      >  6:409951‑M1/1‑117 (MQ=255)

                                aGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgc                                                                                                                    >  7:279360‑M1/1‑115 (MQ=255)

                                aGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgc                                                                                                                    >  8:498925‑M1/1‑115 (MQ=255)

                                aGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacg                                                                                                                     >  2:7289‑M1/1‑115 (MQ=255)

                                    tttGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccac                                                                                                                 >  5:308077‑M1/1‑111 (MQ=255)

                                    tttGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattga                                                                                                                          <  2:54226‑M1/139‑29 (MQ=255)

                                    tttGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattga                                                                                                                          >  1:54226‑M1/1‑111 (MQ=255)

                                         gTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatat                                                                                                            >  8:519367‑M1/1‑106 (MQ=255)

                                          tCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttga                                                                                                                               >  6:106370‑M1/1‑105 (MQ=255)

                                                gtcCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacag                                                                                                    <  7:25988‑M1/149‑51 (MQ=255)

                                                    ttCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcccgttctcttgtccttgaattgaagacgccactatatcaccacagc                                                                                                   >  1:128662‑M1/1‑95 (MQ=255)

                                                    ttCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatc                                                                                                           <  8:118656‑M1/138‑44 (MQ=255)

                                                    ttCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatc                                                                                                           >  7:118656‑M1/1‑95 (MQ=255)

                                                    ttCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgc                                                                                                                    <  1:35715‑M1/129‑35 (MQ=255)

                                                    ttCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgc                                                                                                                    >  2:35715‑M1/1‑95 (MQ=255)

                                                      cGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGAAGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctgttgtccttgaattcaagacgccactatatcaccacagcaagaa                                                                                              >  8:330587‑M1/1‑93 (MQ=255)

                                                       gCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              >  3:203343‑M1/1‑92 (MQ=255)

                                                       gCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              >  2:492656‑M1/1‑92 (MQ=255)

                                                        cAGAACTCGGCGTTGCGGTCGCAGACGGTGATAATTTCTGGTAGTTCTGATGACACCATCAGGATGTCTTTTCCTTCGTCCGCCAGTTGGAtcatcacgctctcttgtccttgtattgaagacgccactatatcaccacagcaagaaca                                                                                            <  8:52126‑M1/149‑59 (MQ=255)

                                                        cAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              >  8:495576‑M1/1‑91 (MQ=255)

                                                        cAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              >  2:29727‑M1/1‑91 (MQ=255)

                                                        cAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaat                                                                                                                             >  1:224288‑M1/1‑91 (MQ=255)

                                                        cAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaat                                                                                                                             <  2:224288‑M1/116‑26 (MQ=255)

                                                            acacGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaa                                                                                         >  8:154602‑M1/1‑87 (MQ=255)

                                                                gccgaTGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTAGTCCGCCAGTTGGCtaatcacgttctcttgtccttgatttgaatacgccactatatcaccacagcaagaacagaaaagat                                                                                    >  4:191319‑M1/3‑83 (MQ=255)

                                                                       cGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggc                                                                              <  2:128662‑M1/148‑73 (MQ=255)

                                                                         gTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgac                                                                           <  7:495576‑M1/149‑76 (MQ=255)

                                                                         gTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgac                                                                           >  8:393247‑M1/1‑74 (MQ=255)

                                                                         gTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              <  6:62259‑M1/130‑57 (MQ=255)

                                                                         gTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaa                                                                                              >  5:62259‑M1/1‑74 (MQ=255)

                                                                              aGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttca                                                                       >  1:385790‑M1/1‑69 (MQ=255)

                                                                                    tGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaa                                                                 >  8:8696‑M1/1‑63 (MQ=255)

                                                                                        aaTTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccaca                                                                                                     <  8:236669‑M1/108‑50 (MQ=255)

                                                                                        aaTTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccaca                                                                                                     >  7:236669‑M1/1‑59 (MQ=255)

                                                                                         aTTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaa                                                           <  5:136190‑M1/149‑92 (MQ=255)

                                                                                         aTTTCAGGTAGTTAAGATGACAGCATCAGGATGACTTTTCCTTCTTCAGAGAGTTGGCtcatcacgttctcttgtcattgtattgaatagtccaatatatgaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataat                                                           <  5:40928‑M1/149‑92 (MQ=255)

                                                                                          tttCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaa                                                          >  4:394429‑M1/1‑57 (MQ=255)

                                                                                           ttCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaat                                                         >  3:162172‑M1/1‑56 (MQ=255)

                                                                                           ttCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaa                                                          <  4:340580‑M1/148‑93 (MQ=255)

                                                                                                gTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttat                                                     >  3:441680‑M1/1‑51 (MQ=255)

                                                                                                       aGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagttta                                             >  8:440976‑M1/1‑44 (MQ=255)

                                                                                                       aGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttg                                                                                                                                >  5:499691‑M1/1‑44 (MQ=255)

                                                                                                       aGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttg                                                                                                                                <  6:499691‑M1/66‑23 (MQ=255)

                                                                                                         aTGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttatt                                           <  1:246728‑M1/149‑108 (MQ=255)

                                                                                                          tGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattt                                          >  8:225809‑M1/1‑41 (MQ=255)

                                                                                                           gACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattt                                          >  6:252532‑M1/1‑40 (MQ=255)

                                                                                                            acacCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttatttta                                        <  7:440976‑M1/149‑111 (MQ=255)

                                                                                                            acacCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttatttta                                        <  6:289853‑M1/149‑111 (MQ=255)

                                                                                                            acacCATCAGGATGACTTTTCAGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaaaagaaaagatgctggcgacttcacaaaaaaataacatttataaagtttatttta                                        >  4:198286‑M1/1‑39 (MQ=255)

                                                                                                              acCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatt                                      <  5:258818‑M1/149‑113 (MQ=255)

                                                                                                              acCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatt                                      >  7:155546‑M1/1‑37 (MQ=255)

                                                                                                              acCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcataacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatt                                      >  3:464486‑M1/1‑37 (MQ=255)

                                                                                                                aatCAGGATGACTTTTCCTTCGTCCGCCAGTTGGCtcatcccgttctcttgtccttgaattgaagacgcaactatatcaccacagcaagaacagaaaagatgctggcgaagtatcaaaaaaataaaatttataaagtatattttaatgt                                    >  8:357336‑M1/2‑35 (MQ=255)

                                                                                                                 aTCAGGATGACTTTTCCTTCGTCCGCCAGTTGGCtcatcacgttctcttgaccttgaattgaagactccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgt                                    >  1:308940‑M1/1‑34 (MQ=255)

                                                                                                                 aTCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtg                                   <  7:13‑M1/149‑116 (MQ=255)

                                                                                                                  tCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatt                                      <  1:106638‑M1/145‑113 (MQ=255)

                                                                                                                  tCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatt                                      >  2:106638‑M1/1‑33 (MQ=255)

                                                                                                                      gATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtcctttaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataatgtttattttattgtgaacaa                              >  4:266252‑M1/1‑29 (MQ=255)

                                                                                                                      gATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaa                              >  7:489841‑M1/1‑29 (MQ=255)

                                                                                                                      gATGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttggccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaa                              >  4:103325‑M1/1‑29 (MQ=255)

                                                                                                                        tGACTTTTCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttatcgtgaacaatg                            <  1:29727‑M1/149‑123 (MQ=255)

                                                                                                                            ttttCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttatttttttgtgaacaatggc                          >  1:359623‑M1/1‑23 (MQ=255)

                                                                                                                            ttttCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggc                          >  1:434666‑M1/1‑23 (MQ=255)

                                                                                                                            ttttCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggc                          >  2:255366‑M1/1‑23 (MQ=255)

                                                                                                                              ttCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaagtaaaatttataaagtttattttattgtgaacaatggcga                       <  7:519367‑M1/148‑128 (MQ=255)

                                                                                                                               tCCGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagt                      <  4:162172‑M1/148‑129 (MQ=255)

                                                                                                                                ccGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtg                     <  7:393247‑M1/148‑130 (MQ=255)

                                                                                                                                ccGTCGTCCGCCAGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtg                     <  5:298804‑M1/148‑130 (MQ=255)

                                                                                                                                            aGTTGGCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtggcttaaaatttta        <  4:203343‑M1/149‑143 (MQ=255)

                                                                                                                                                ggCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtggcttaaaattttattt     >  1:164220‑M1/1‑3 (MQ=255)

                                                                                                                                                 gCtcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtggcttaaaattttatttca   <  2:385790‑M1/149‑148 (MQ=255)

                                                                                                                                                  ctcatcacgttctcttgtccttgaattgaagacgccactatatcaccacagcaagaacagaaaagatgctggcgacttcacaaaaaaataaaatttataaagtttattttattgtgaacaatggcgagtggcttaaaattttatttcat  <  4:452044‑M1/149‑149 (MQ=255)

TCTCCTCTTCGCTCATGTCATCGCGATTCGTCAGGATTTGCGTCAGTCGTCCTTCGCAGAACACGGCGATGCGGTCGCAGACGGTGATAATTTCAGGTAGTTCAGATGACACCATCAGGATGACTTTTCCGTCGTCCGCCAGTTGGCGCATCACTTTGTAAATTTCGGCTTTCGCGCCAACGTCGATGCCGCGGGTAGGTTCATCGAAAATAATCACTTCCGGGCAACAGCACAGCCATTTGGAGATCAGGACTTTCTGCTGATTTCCCCCGGAGAGTTCGGTGATATTCTGGTT  >  NC_000913/4309477‑4309771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`