breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913756,7360CA43.2% 17.4 / 56.0 44A277E (GCG→GAG) sdhAsuccinate dehydrogenase, flavoprotein subunit
*NC_0009134,220,0090GT35.3% 47.8 / 27.1 34V472F (GTT→TTT) aceKisocitrate dehydrogenase kinase/phosphatase
*NC_0009134,296,0600CT23.7% 69.6 / 18.1 38intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,591,4980TA21.4% 87.3 / 20.2 42intergenic (‑219/‑159)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,4990CT21.4% 82.4 / 17.9 42intergenic (‑220/‑158)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,5000AG21.4% 79.0 / 18.3 42intergenic (‑221/‑157)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,5010TA21.4% 87.8 / 20.0 42intergenic (‑222/‑156)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009133,423,4050AG20.6% 70.8 / 12.1 35intergenic (+211/+18)yhdZ/rrfFputative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
*NC_000913832,3640AG20.0% 62.7 / 10.5 32intergenic (+128/+104)rhlE/ybiAATP‑dependent RNA helicase/DUF1768 family protein

Marginal new junction evidence (lowest skew 10 of 49 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1132795 =32 (0.840)6 (0.170) 6/252 3.7 16.6% coding (222/1209 nt) flgE flagellar hook protein
?NC_000913 1132842 = 30 (0.830)coding (269/1209 nt) flgE flagellar hook protein
* ? NC_000913 812959 =41 (1.070)6 (0.170) 5/240 3.9 14.0% intergenic (+12/‑567) bioD/uvrB dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component
?NC_000913 813011 = 37 (1.070)intergenic (+64/‑515) bioD/uvrB dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component
* ? NC_000913 726676 =20 (0.520)5 (0.140) 5/256 4.1 17.2% coding (361/2049 nt) kdpB potassium translocating ATPase, subunit B
?NC_000913 726726 = 29 (0.790)coding (311/2049 nt) kdpB potassium translocating ATPase, subunit B
* ? NC_000913 = 385820526 (0.680)4 (0.120) 4/240 4.3 13.0% coding (200/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?NC_000913 = 3858228 30 (0.870)coding (177/1494 nt) yidJ sulfatase/phosphatase superfamily protein
* ? NC_000913 2729475 =23 (0.600)4 (0.110) 4/246 4.4 19.4% intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 4168363 12 (0.340)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =25 (0.650)4 (0.110) 4/246 4.4 16.0% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 19 (0.540)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 972559 =35 (0.920)4 (0.110) 4/246 4.4 11.2% coding (808/894 nt) ycbJ protein kinase‑like domain protein
?NC_000913 972607 = 31 (0.880)coding (856/894 nt) ycbJ protein kinase‑like domain protein
* ? NC_000913 3514835 =40 (1.050)4 (0.110) 4/252 4.5 10.0% coding (225/678 nt) rpe D‑ribulose‑5‑phosphate 3‑epimerase
?NC_000913 3514868 = 34 (0.940)coding (192/678 nt) rpe D‑ribulose‑5‑phosphate 3‑epimerase
* ? NC_000913 3307012 =42 (1.100)4 (0.110) 4/252 4.5 8.6% coding (849/1890 nt) deaD ATP‑dependent RNA helicase
?NC_000913 3307049 = 45 (1.240)coding (812/1890 nt) deaD ATP‑dependent RNA helicase
* ? NC_000913 3242106 =36 (0.940)4 (0.110) 4/248 4.5 9.9% coding (1209/1488 nt) uxaA altronate hydrolase
?NC_000913 3242168 = 39 (1.100)coding (1147/1488 nt) uxaA altronate hydrolase