mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 54.5% | ‑6.6 / 40.5 | 33 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,025,579 | 0 | T | C | 30.0% | 22.2 / 11.9 | 20 | S23S (AGT→AGC) ‡ | yedP | putative mannosyl‑3‑phosphoglycerate phosphatase |
| * | NC_000913 | 2,025,578 | 0 | G | A | 28.6% | 26.5 / 11.3 | 21 | S23N (AGT→AAT) ‡ | yedP | putative mannosyl‑3‑phosphoglycerate phosphatase |
| * | NC_000913 | 3,832,194 | 0 | A | T | 23.7% | 57.0 / 17.9 | 38 | intergenic (+28/+25) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| * | NC_000913 | 3,832,188 | 0 | A | T | 23.1% | 66.1 / 20.3 | 39 | intergenic (+22/+31) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| * | NC_000913 | 3,832,191 | 0 | C | G | 23.1% | 86.0 / 20.2 | 39 | intergenic (+25/+28) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| * | NC_000913 | 774,634 | 0 | C | G | 20.8% | 51.4 / 11.1 | 24 | intergenic (+32/‑118) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 774,637 | 0 | C | G | 20.8% | 53.5 / 10.7 | 24 | intergenic (+35/‑115) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| * | NC_000913 | 83,587 | 0 | A | C | 20.6% | 68.8 / 17.5 | 34 | intergenic (‑58/+35) | leuA/leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| * | NC_000913 | 83,590 | 0 | G | T | 20.6% | 80.9 / 14.9 | 34 | intergenic (‑61/+32) | leuA/leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| * | NC_000913 | 860,905 | 0 | T | C | 20.0% | 81.0 / 15.0 | 40 | N568D (AAC→GAC) | ybiW | putative pyruvate formate lyase |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 382282 = | NA (NA) | 7 (0.210) | 7/250 | 3.3 | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 843355 | 35 (0.980) | 5 (0.150) | 5/248 | 4.0 | 13.5% | coding (2126/2226 nt) | ybiO | mechanosensitive channel protein, intermediate conductance |
| ? | NC_000913 | = 843369 | 31 (0.920) | coding (2112/2226 nt) | ybiO | mechanosensitive channel protein, intermediate conductance | |||||
| * | ? | NC_000913 | = 381837 | NA (NA) | 6 (0.180) | 5/250 | 4.0 | NA | noncoding (578/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4168341 | 16 (0.450) | 4 (0.120) | 4/242 | 4.3 | 24.4% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 10 (0.300) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 15 (0.420) | 4 (0.120) | 4/242 | 4.3 | 21.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 16 (0.480) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 1124056 = | 28 (0.780) | 4 (0.120) | 4/246 | 4.3 | 11.9% | intergenic (‑2/+62) | grxB/mdtH | glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| ? | NC_000913 | 1124103 = | 33 (0.980) | intergenic (‑49/+15) | grxB/mdtH | glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin | |||||
| * | ? | NC_000913 | = 744025 | 43 (1.200) | 4 (0.120) | 4/244 | 4.3 | 9.2% | coding (433/657 nt) | ybgJ | putative allophanate hydrolase, subunit 1 |
| ? | NC_000913 | = 744063 | 39 (1.170) | coding (471/657 nt) | ybgJ | putative allophanate hydrolase, subunit 1 | |||||
| * | ? | NC_000913 | 461275 = | 33 (0.920) | 4 (0.120) | 4/246 | 4.3 | 10.5% | intergenic (+33/‑176) | lon/hupB | DNA‑binding ATP‑dependent protease La/HU, DNA‑binding transcriptional regulator, beta subunit |
| ? | NC_000913 | 461305 = | 37 (1.100) | intergenic (+63/‑146) | lon/hupB | DNA‑binding ATP‑dependent protease La/HU, DNA‑binding transcriptional regulator, beta subunit | |||||
| * | ? | NC_000913 | 4497494 = | 36 (1.010) | 4 (0.120) | 4/250 | 4.4 | 11.7% | pseudogene (820/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | 4497532 = | 26 (0.760) | pseudogene (858/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | 3917461 = | 36 (1.010) | 4 (0.120) | 4/252 | 4.4 | 9.8% | coding (805/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| ? | NC_000913 | 3917489 = | 39 (1.130) | coding (777/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit | |||||