New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2878265	22 (0.680)	10 (0.330)	10/240	2.0	31.9%	intergenic (+647/+304)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease
	?	NC_000913	= 2878269	22 (0.720)					intergenic (+651/+300)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease

ACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGCGT  >  NC_000913/2878127‑2878407                                                                                                                                               |                                                                                                                                           aCGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCgcgg                                                                                                                                        >  3:88690‑M2/1‑143 (MQ=255)    gTTTATCCCCGCTGGCGCGGGGAACCCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAAc                                                                                                                                   >  3:118364/1‑149 (MQ=255)     tttATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAAct                                                                                                                                  >  7:43495/1‑149 (MQ=255)     tttATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAAct                                                                                                                                  >  5:141144/1‑149 (MQ=255)     tttATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAAct                                                                                                                                  >  3:58567/1‑149 (MQ=255)                     cgGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAAtt                                                                                                                  <  4:58567/149‑1 (MQ=255)                          aaCTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAAc                                                                                                             <  6:141144/149‑1 (MQ=255)                                             gcAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGttt                                                                                           >  4:102831/1‑148 (MQ=255)                                             gcAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTa                                                                                          >  2:31444/1‑149 (MQ=255)                                                        gcgATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGcgc                                                                                 >  5:67914/1‑145 (MQ=255)                                                         cgATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGgcg                                                                              >  8:57164/1‑149 (MQ=255)                                                                cgGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGaa                                                                       <  4:118364/149‑1 (MQ=255)                                                                          ccGCTGGCGCTGGGAACTCGCGACCGCTCAGAACATCCTGATCCGATCCAAACGGTTTACCCCCGCTGGCGCGGGGAACTCTCAACAATATCAATTACATCCGACATGGAGCCCTGTTTATCCCCGCTGGCGCGGGGAACTCAGCgtgt                                                             <  8:43495/149‑1 (MQ=255)                                                                                gcgcGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGc                                                        >  3:110383/1‑148 (MQ=255)                                                                                             gcgACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGc                                            <  3:102831/147‑1 (MQ=255)                                                                                              cgACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTc                                         <  1:31444/149‑1 (MQ=255)                                                                                                       aGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGt                                <  7:57164/149‑1 (MQ=255)                                                                                                       aGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGt                                >  5:36383/1‑149 (MQ=255)                                                                                                               cAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGc                                   <  6:22086/138‑1 (MQ=255)                                                                                                               cAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGc                                   >  5:22086/1‑138 (MQ=255)                                                                                                                     cGATCCAAACGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccg                                                                <  5:108741‑M2/103‑77 (MQ=255)                                                                                                                     cGATCCAAACGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccg                                                                >  6:108741‑M2/1‑27 (MQ=255)                                                                                                                      gATCCAAACGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcgag                            <  1:11741‑M2/138‑113 (MQ=255)                                                                                                                      gATCCAAACGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcgag                            >  2:11741‑M2/1‑26 (MQ=255)                                                                                                                           aaaCGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctga                                                                                                     <  2:58377‑M2/60‑40 (MQ=255)                                                                                                                           aaaCGGTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctga                                                                                                     >  1:58377‑M2/1‑21 (MQ=255)                                                                                                                            aaCGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAgg                                                                                                      <  3:116591/58‑1 (MQ=255)                                                                                                                             aCGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGaa          <  4:110383/149‑1 (MQ=255)                                                                                                                                gTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgcccgcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcga                             <  5:122853‑M2/127‑112 (MQ=255)                                                                                                                                gTTTATCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcga                             >  6:122853‑M2/1‑16 (MQ=255)                                                                                                                                     tCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcgagttccccgcgccagcggggataaacc   >  3:128155‑M2/1‑11 (MQ=255)                                                                                                                                     tCCCCGCTGGCgcggggataaaccgtttggatcgggtctggaatttctgagcggtcgcgagttccccgcgccagcggggataaaccgcgaatcgcgcataccctgcgcgtcgccgcctgcgagttccccgcgccagcggggataaacc   <  4:128155‑M2/148‑138 (MQ=255)                                                                                                                                       cccGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGCGt  >  8:13513/1‑147 (MQ=255)                                                                                                                                               |                                                                                                                                           ACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGCGT  >  NC_000913/2878127‑2878407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.