New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4590321 =16 (0.490)7 (0.230) 7/230 2.7 33.3% coding (959/2151 nt) yjiY putative transporter
?NC_000913 4590342 = 13 (0.420)coding (938/2151 nt) yjiY putative transporter

CCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGG  >  NC_000913/4590177‑4590463
                                                                                                                                                |                                                                                                                                              
tgcgtttgtttccgcactgctgccagtgtggctgatcctcgcaccgcgcgactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAg                                                                                                                                             >  8:25051‑M1/145‑148 (MQ=255)
          tGAACCTCGCGTCGGTTTAATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCTCAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGc                                                                                                                                                <  6:102743/135‑1 (MQ=255)
             gcactgctgccagtgtggctgatcctcgcaccgcgcgactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTAc                                                                                                                               <  8:21264‑M1/18‑1 (MQ=255)
                ctgctgccagtgtggctgatcctcgcaccgcgcgactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTgg                                                                                                                            >  7:21264‑M1/129‑149 (MQ=255)
                  gcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCa                                                                                                                                              >  3:7421/1‑129 (MQ=255)
                  gcgTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCa                                                                                                                                              <  4:7421/129‑1 (MQ=255)
                      ccagtgtggctgatcctcgcaccgcgcgactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATg                                                                                                                      >  2:125752‑M1/123‑149 (MQ=255)
                                   cagcagTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCa                                                                                                         <  2:6560/149‑1 (MQ=255)
                                                 gactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCgg                                                                                                  <  1:29829‑M1/47‑1 (MQ=255)
                                                 gactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCgg                                                                                                  >  2:29829‑M1/96‑142 (MQ=255)
                                                        ggAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGa                                                                                    >  6:111243/1‑149 (MQ=255)
                                                                  aGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTc                                                                                              <  4:85492/129‑1 (MQ=255)
                                                                             gCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTcc                                                                                                    <  3:112908/112‑1 (MQ=255)
                                                                             gCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTcc                                                                                                    >  4:112908/1‑112 (MQ=255)
                                                                                          ccacAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGAtttt                                                  >  1:123822/1‑149 (MQ=255)
                                                                                           cacaGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCa                                                                                                                                              <  4:71657/56‑1 (MQ=255)
                                                                                           cacaGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCa                                                                                                                                              >  3:71657/1‑56 (MQ=255)
                                                                                              aGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGc                                                         >  4:103835/1‑138 (MQ=255)
                                                                                              aGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGc                                                         <  3:103835/138‑1 (MQ=255)
                                                                                                gctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCAt                                                                                                              <  2:170770‑M1/35‑1 (MQ=255)
                                                                                                gctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCAt                                                                                                              >  1:170770‑M1/49‑83 (MQ=255)
                                                                                                 cGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAg                                           <  5:111243/149‑1 (MQ=255)
                                                                                                                    cGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTcgcgcg                        <  2:123822/149‑1 (MQ=255)
                                                                                                                                          aGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTgg  >  3:47252/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                              
CCGTAGCCGATGAAACGCGCGTCGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGG  >  NC_000913/4590177‑4590463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.