New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4590321 =16 (0.490)7 (0.230) 7/230 2.7 33.3% coding (959/2151 nt) yjiY putative transporter
?NC_000913 4590342 = 13 (0.420)coding (938/2151 nt) yjiY putative transporter

CGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGTGCGGAAACAAACGCA  >  NC_000913/4590199‑4590485
                                                                                                                                               |                                                                                                                                               
ccagtgtggctgatcctcgcaccgcgcgactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATg                                                                                                                                            >  2:125752‑M1/123‑149 (MQ=255)
             cagcagTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCa                                                                                                                               <  2:6560/149‑1 (MQ=255)
                           gactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCgg                                                                                                                        <  1:29829‑M1/47‑1 (MQ=255)
                           gactatctggcaaccttcctgaaaatcggcgttatcgtcggcctggcgctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCgg                                                                                                                        >  2:29829‑M1/96‑142 (MQ=255)
                                  ggAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGa                                                                                                          >  6:111243/1‑149 (MQ=255)
                                            aGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTc                                                                                                                    <  4:85492/129‑1 (MQ=255)
                                                       gCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTcc                                                                                                                          >  4:112908/1‑112 (MQ=255)
                                                       gCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTcc                                                                                                                          <  3:112908/112‑1 (MQ=255)
                                                                    ccacAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGAtttt                                                                        >  1:123822/1‑149 (MQ=255)
                                                                        aGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGc                                                                               >  4:103835/1‑138 (MQ=255)
                                                                        aGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGc                                                                               <  3:103835/138‑1 (MQ=255)
                                                                          gctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCAt                                                                                                                                    >  1:170770‑M1/49‑83 (MQ=255)
                                                                          gctgggtatcgtggtgctgaacccggaactgaaaatgcctgccatgacCCAGTACCGTCAATGTACTGGGTCATGGCAGGCAt                                                                                                                                    <  2:170770‑M1/35‑1 (MQ=255)
                                                                           cGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAg                                                                 <  5:111243/149‑1 (MQ=255)
                                                                                              cGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTcgcgcg                                              <  2:123822/149‑1 (MQ=255)
                                                                                                ccggaactgaaaatgcctgccatgacccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTc                                                   >  2:29829‑M2/48‑142 (MQ=255)
                                                                                                ccggaactgaaaatgcctgccatgacccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTc                                                   <  1:29829‑M2/95‑1 (MQ=255)
                                                                                                            atgcctgccatgacccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAgc                                                                                                  <  2:170770‑M2/48‑1 (MQ=255)
                                                                                                            atgcctgccatgacccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAgc                                                                                                  >  1:170770‑M2/36‑83 (MQ=255)
                                                                                                                    catgacccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTgg                        >  2:125752‑M2/28‑149 (MQ=255)
                                                                                                                    aGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTgg                        >  3:47252/1‑149 (MQ=255)
                                                                                                                          ccagtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGcagcag                  >  7:21264‑M2/22‑149 (MQ=255)
                                                                                                                           CAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGt                 <  5:127710‑M1/149‑1 (MQ=255)
                                                                                                                             gtacattgacggtactggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGTGc               <  8:21264‑M2/131‑1 (MQ=255)
                                                                                                                             GTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGTGc               >  6:127710‑M1/1‑149 (MQ=255)
                                                                                                                                 cGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGt                 <  2:90565/143‑1 (MQ=255)
                                                                                                                                 cGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGt                 >  1:90565/1‑143 (MQ=255)
                                                                                                                                           ctggGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGTGCGGAAACAAACGCa  >  8:25051‑M2/5‑148 (MQ=255)
                                                                                                                                               |                                                                                                                                               
CGGTTTCATTAGCCAGCAGTTTTGGCGTCGTACCGGAAGAGATCAGCGCGTGGAAGCCAGATACCGCACCACAGGCGATGGTGATGAACAGGAACGGGAACAGAGCGCCTTTCCACAGCGGGCCAGTACCGTCAATGTACTGGGTCATGGCAGGCATTTTCAGTTCCGGGTTCAGCACCACGATACCCAGCGCCAGGCCGACGATAACGCCGATTTTCAGGAAGGTTGCCAGATAGTCGCGCGGTGCGAGGATCAGCCACACTGGCAGCAGTGCGGAAACAAACGCA  >  NC_000913/4590199‑4590485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.