breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT38.8% 36.4 / 51.1 49intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009133,877,5580GC22.7% 44.5 / 11.3 22intergenic (‑93/+147)yidB/gyrBDUF937 family protein/DNA gyrase, subunit B
*NC_0009133,129,7100TA21.4% 55.3 / 11.9 28pseudogene (434/1101 nt)yghOpseudogene, IS‑interrupted
*NC_0009133,476,5850GA20.0% 106.4 / 18.2 50intergenic (‑145/+22)yheO/fkpAputative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
*NC_0009133,476,5860TC20.0% 98.3 / 21.0 50intergenic (‑146/+21)yheO/fkpAputative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)

Marginal new junction evidence (lowest skew 10 of 48 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 292537332 (0.970)6 (0.190) 6/232 3.0 17.3% coding (26/849 nt) queF 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)
?NC_000913 = 2925381 27 (0.860)coding (34/849 nt) queF 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)
* ? NC_000913 = 263196938 (1.160)6 (0.190) 6/230 3.0 14.3% coding (567/1578 nt) guaA GMP synthetase (glutamine aminotransferase)
?NC_000913 = 2631973 36 (1.160)coding (563/1578 nt) guaA GMP synthetase (glutamine aminotransferase)
* ? NC_000913 = 355774019 (0.580)5 (0.160) 5/230 3.3 22.3% coding (340/1227 nt) rtcB RNA‑splicing ligase
?NC_000913 = 3557761 17 (0.550)coding (319/1227 nt) rtcB RNA‑splicing ligase
* ? NC_000913 = 165683322 (0.670)5 (0.160) 5/228 3.3 19.0% coding (625/711 nt) ynfC UPF0257 family lipoprotein
?NC_000913 = 1656847 22 (0.720)coding (611/711 nt) ynfC UPF0257 family lipoprotein
* ? NC_000913 315563 =NA (NA)5 (0.170) 5/224 3.3 NA noncoding (335/1255 nt) IS3 repeat region
?NC_000913 315599 = NA (NA)noncoding (371/1255 nt) IS3 repeat region
* ? NC_000913 2515533 =12 (0.360)3 (0.120)
+29 bp
3/186 3.5 36.0% noncoding (1261/1345 nt) IS186 repeat region
?NC_000913 = 4543616 2 (0.060)coding (502/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? NC_000913 609267 =5 (0.150)3 (0.120)
+29 bp
3/186 3.5 53.0% noncoding (1261/1345 nt) IS186 repeat region
?NC_000913 = 4543616 2 (0.060)coding (502/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? NC_000913 16647 =5 (0.150)3 (0.120)
+29 bp
3/186 3.5 53.0% noncoding (1261/1345 nt) IS186 repeat region
?NC_000913 = 4543616 2 (0.060)coding (502/549 nt) fimA major type 1 subunit fimbrin (pilin)
* ? NC_000913 2729475 =14 (0.430)4 (0.130) 4/224 3.6 26.8% intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 4168363 9 (0.300)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =7 (0.210)4 (0.130) 4/224 3.6 28.1% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 14 (0.460)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon