mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.8% | 36.4 / 51.1 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,877,558 | 0 | G | C | 22.7% | 44.5 / 11.3 | 22 | intergenic (‑93/+147) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B |
| * | NC_000913 | 3,129,710 | 0 | T | A | 21.4% | 55.3 / 11.9 | 28 | pseudogene (434/1101 nt) | yghO | pseudogene, IS‑interrupted |
| * | NC_000913 | 3,476,585 | 0 | G | A | 20.0% | 106.4 / 18.2 | 50 | intergenic (‑145/+22) | yheO/fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| * | NC_000913 | 3,476,586 | 0 | T | C | 20.0% | 98.3 / 21.0 | 50 | intergenic (‑146/+21) | yheO/fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2925373 | 32 (0.970) | 6 (0.190) | 6/232 | 3.0 | 17.3% | coding (26/849 nt) | queF | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| ? | NC_000913 | = 2925381 | 27 (0.860) | coding (34/849 nt) | queF | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) | |||||
| * | ? | NC_000913 | = 2631969 | 38 (1.160) | 6 (0.190) | 6/230 | 3.0 | 14.3% | coding (567/1578 nt) | guaA | GMP synthetase (glutamine aminotransferase) |
| ? | NC_000913 | = 2631973 | 36 (1.160) | coding (563/1578 nt) | guaA | GMP synthetase (glutamine aminotransferase) | |||||
| * | ? | NC_000913 | = 3557740 | 19 (0.580) | 5 (0.160) | 5/230 | 3.3 | 22.3% | coding (340/1227 nt) | rtcB | RNA‑splicing ligase |
| ? | NC_000913 | = 3557761 | 17 (0.550) | coding (319/1227 nt) | rtcB | RNA‑splicing ligase | |||||
| * | ? | NC_000913 | = 1656833 | 22 (0.670) | 5 (0.160) | 5/228 | 3.3 | 19.0% | coding (625/711 nt) | ynfC | UPF0257 family lipoprotein |
| ? | NC_000913 | = 1656847 | 22 (0.720) | coding (611/711 nt) | ynfC | UPF0257 family lipoprotein | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 5 (0.170) | 5/224 | 3.3 | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 2515533 = | 12 (0.360) | 3 (0.120) +29 bp |
3/186 | 3.5 | 36.0% | noncoding (1261/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 4543616 | 2 (0.060) | coding (502/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 609267 = | 5 (0.150) | 3 (0.120) +29 bp |
3/186 | 3.5 | 53.0% | noncoding (1261/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 4543616 | 2 (0.060) | coding (502/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 16647 = | 5 (0.150) | 3 (0.120) +29 bp |
3/186 | 3.5 | 53.0% | noncoding (1261/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 4543616 | 2 (0.060) | coding (502/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2729475 = | 14 (0.430) | 4 (0.130) | 4/224 | 3.6 | 26.8% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 9 (0.300) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 7 (0.210) | 4 (0.130) | 4/224 | 3.6 | 28.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 14 (0.460) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||