mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 24.4% | 68.0 / 16.7 | 42 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 3,875,522 | 0 | C | G | 23.8% | 78.7 / 13.5 | 42 | L29V (CTG→GTG) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 23 (0.200) | 11 (0.100) | 11/504 | 6.7 | 24.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 45 (0.410) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 23 (0.200) | 9 (0.080) | 8/504 | 7.9 | 21.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 45 (0.410) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4280996 = | 131 (1.150) | 7 (0.060) | 6/500 | 8.7 | 4.9% | coding (1017/1650 nt) | yjcE | putative cation/proton antiporter |
| ? | NC_000913 | 4281529 = | 149 (1.370) | coding (1550/1650 nt) | yjcE | putative cation/proton antiporter | |||||
| * | ? | NC_000913 | 1272758 = | 106 (0.930) | 5 (0.050) | 5/500 | 9.2 | 4.9% | coding (252/696 nt) | chaC | cation transport regulator |
| ? | NC_000913 | 1273352 = | 92 (0.850) | coding (248/354 nt) | ychN | putative sulfur relay protein | |||||
| * | ? | NC_000913 | = 4265212 | 152 (1.340) | 6 (0.050) | 5/508 | 9.3 | 3.6% | coding (899/1416 nt) | dnaB | replicative DNA helicase |
| ? | NC_000913 | = 4265441 | 172 (1.560) | coding (1128/1416 nt) | dnaB | replicative DNA helicase | |||||
| * | ? | NC_000913 | 3463082 = | 98 (0.860) | 6 (0.050) | 5/512 | 9.4 | 5.9% | coding (159/984 nt) | gspK | general secretory pathway component, cryptic |
| ? | NC_000913 | 3463296 = | 95 (0.850) | coding (373/984 nt) | gspK | general secretory pathway component, cryptic | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 4 (0.040) | 3/444 | 9.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3727557 | 112 (0.990) | 6 (0.050) | 4/506 | 9.9 | 6.9% | coding (192/342 nt) | yiaB | YiaAB family inner membrane protein |
| ? | NC_000913 | = 3727756 | 53 (0.480) | intergenic (‑8/+161) | yiaB/xylB | YiaAB family inner membrane protein/xylulokinase | |||||
| * | ? | NC_000913 | = 2489847 | 74 (0.650) | 4 (0.040) | 4/510 | 9.9 | 6.2% | coding (340/945 nt) | yfdV | putative transporter |
| ? | NC_000913 | = 2490760 | 48 (0.430) | coding (1191/1695 nt) | oxc | oxalyl CoA decarboxylase, ThDP‑dependent | |||||
| * | ? | NC_000913 | = 365932 | 111 (0.980) | 4 (0.040) | 4/506 | 9.9 | 3.7% | coding (374/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | = 366332 | 100 (0.910) | intergenic (‑27/+96) | lacZ/lacI | beta‑D‑galactosidase/lactose‑inducible lac operon transcriptional repressor | |||||