Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)32 (0.560) 25/418 NT 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)61 (1.070) 41/418 NT 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 106 total aligned reads displayed.

CAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTT  >  NC_000913/1979261‑1979716
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   
ccaacgggcgatgttattcccgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                                                                                                     >  1:288908‑M1/226‑229 (MQ=255)
  aactggcgattttaatcacgcttgccaacctgtttcgggctgaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                                                                                                   >  1:407030‑M1/224‑229 (MQ=255)
     tggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggccgattcaaggcatttacgggagaaaaaatcggctcaaacatgacgcaatgaaaggagtgagtcgaccggaaagaatttaccccattattcacaccttccCTAAt                                                                                                                                                                                                                                    <  2:655931‑M1/5‑1 (MQ=255)
     tggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggactaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaaaatgaagaaatgaaatgactgagtcagccgagaagaatttcccagctaattccaaccttccCCAAttact                                                                                                                                                                                                                                <  2:633715‑M1/9‑3 (MQ=255)
         gatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagaacgcactaaaaactggggataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACa                                                                                                                                                                                                                            >  1:547893‑M1/217‑229 (MQ=255)
          atttttttcccgctgtccaaccggtttcgggcggaccaaatggtacgtcagggggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaa                                                                                                                                                                                                                           >  2:524003‑M1/216‑229 (MQ=255)
            tAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                                                                                                         <  1:401188‑M1/229‑13 (MQ=255)
             ttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaaga                                                                                                                                                                                                                        >  1:328203‑M1/213‑229 (MQ=255)
                 tcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgaaaagaatttccccgcttattcgacccttccCTAATTAAATACAAAAAAAgg                                                                                                                                                                                                                    <  2:466185‑M1/21‑1 (MQ=255)
                   ataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                                                                                                                  <  2:546027‑M1/229‑20 (MQ=255)
                    taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                                 >  1:481558‑M1/1‑209 (MQ=255)
                    taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCGCCCAACAAAATAAagaaggggggaacaaatcac                                                                                                                                                                                                                 >  2:103451‑M1/1‑209 (MQ=255)
                     gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaac                                                                                                                                                                                                                <  1:4949‑M1/25‑1 (MQ=255)
                     aaggtagacttttgtTTTGGGTGTATTTAAAACTGTTAAAAAGGTTTTCGCTACTCAAGCAAGCAACAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccct                                                                                                                                                                                                                <  1:570025‑M1/222‑22 (MQ=255)
                        tgccaacttttttcgggcggaacaaatgatacgttagttggagagatctcactaaaacctggggataacgccttaaatggagaagaaacggtataaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGACAGGCAACAAt                                                                                                                                                                                                             >  2:68985‑M1/202‑229 (MQ=255)
                        ggccaacctgtttcggggggaccaaatgatacggcagggggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                             >  2:474786‑M1/202‑229 (MQ=255)
                         tatattTTTGTTTTGGGTGTTTTTCAAACTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGGGTACAGACAAAATAACTAACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTCTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                                                                                                            <  2:221895‑M1/228‑26 (MQ=255)
                            aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                                                                                                         >  1:176040‑M1/1‑201 (MQ=255)
                            aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgaaagatgcgaacaagtccctgatataa                                                                                                                                                                                                         >  1:230254‑M1/1‑201 (MQ=255)
                             acctgttgcgggcggaccaaatgatacgtcagtggtagagatctcactaaaaactggggataacggcttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACt                                                                                                                                                                                                        >  1:299935‑M1/197‑229 (MQ=255)
                               tttgttttgGGTTTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagat                                                                                                                                                                                                      <  2:298485‑M1/229‑32 (MQ=255)
                                    tttgGGTTTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAGGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGGTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                                                                                                                 <  1:634106‑M1/229‑37 (MQ=255)
                                          ggaccaaatgatccggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacgggctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                           >  1:225044‑M1/184‑229 (MQ=255)
                                          ggaccaaatgatacgtcagtgggagagatcgtactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggatgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                           >  2:654888‑M1/184‑229 (MQ=255)
                                              caaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                                                                                                       >  2:452754‑M1/180‑229 (MQ=255)
                                               tttaatctTTTAAAAAGTTTTTCGTCATCCTGACAAGAAAAAATGAAACAAGAATAATCGAAATGGGATGTTGTGCACAGTCAAAATAACTCACCTTAAATAATCATCTGCTATAAATAATCACTTGCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                                                                                                      <  2:230254‑M1/226‑48 (MQ=255)
                                                 cAATCGTTTAAAAAGTGTTTCGCTACGATAGAAAGCAAAAAGGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAGCTCAACGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAACGCACAACAAACTAAggaaggtgcgaacaagtacctgataggagatcatatttgtcatctggag                                                                                                                                                                                    <  2:554987‑M1/229‑50 (MQ=255)
                                                  aaTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgat                                                                                                                                                                                                             <  2:595700‑M1/203‑25 (MQ=255)
                                                  aaTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgaa                                                                                                                                                                                                             >  1:595701‑M1/1‑179 (MQ=255)
                                                    atacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                                  >  1:560648‑M1/174‑228 (MQ=255)
                                                    atacgtcagtgggagaaatctcaataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattaaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                                  >  2:563052‑M1/174‑228 (MQ=255)
                                                      acgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGCAAACAATCAACTTAATGTTAATGAAATGTTttaaa                                                                                                                                                                                 <  2:697750‑M1/56‑3 (MQ=255)
                                                        ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagtgcagaacaagtccctaatatgagatcatatttgtcatctgaaccacccta                                                                                                                                                                             >  2:75111‑M1/1‑173 (MQ=255)
                                                        ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca                                                                                                                                                                                           <  1:75111‑M1/215‑43 (MQ=255)
                                                        ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                                                                                                        >  1:182944‑M1/1‑173 (MQ=255)
                                                        ttAAAAAGTTTTTCGCTAAGCTAGCAAGGAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaac                                                                                                                                                                                                                        <  2:182944‑M1/186‑14 (MQ=255)
                                                           agtgggagagatctcactaaaaactggggataaccccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCATCTTAATGTTAATGAAATGTTTTACATATATTa                                                                                                                                                                          >  2:447095‑M1/167‑229 (MQ=255)
                                                              aGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACAATTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                       <  1:103451‑M1/229‑63 (MQ=255)
                                                               ggagagattttactaaaaacttgggataacgccttaaatggcaaaaaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa                                                                                                                                                                      >  2:115233‑M1/163‑229 (MQ=255)
                                                                gagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                                                                                                     >  1:466185‑M1/162‑229 (MQ=255)
                                                                       ctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                                                                                                                  <  2:536692‑M1/23‑1 (MQ=255)
                                                                         cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                                                                                                     <  1:198680‑M1/68‑1 (MQ=255)
                                                                         cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggatgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                                                                                                     >  2:198680‑M1/153‑220 (MQ=255)
                                                                                            cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTa                                                                                                                                         <  1:658927‑M1/96‑1 (MQ=255)
                                                                                                cggaATAATCGAAATGGGATGTTGCGCACGATCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                                                                                                     <  1:343949‑M1/228‑97 (MQ=255)
                                                                                                            aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                                                                                                         >  1:496616‑M1/1‑121 (MQ=255)
                                                                                                                cggtctaaataggctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                                                                                                                     >  2:4949‑M1/114‑229 (MQ=255)
                                                                                                                    ttaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacaggaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                                                                                                                 >  2:658926‑M1/110‑229 (MQ=255)
                                                                                                                          aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                                                                                                           >  1:697751‑M1/104‑229 (MQ=255)
                                                                                                                             ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                                                                                                    <  1:121628‑M1/5‑1 (MQ=255)
                                                                                                                             ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                                                                                                    >  2:121628‑M1/101‑105 (MQ=255)
                                                                                                                               tCAAAATAACTCACCGTAAATAATCATCTGCTATAACTAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgtagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtaagaccag                                                                                                      >  1:541537‑M1/1‑102 (MQ=255)
                                                                                                                                      ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                                                                                                                 >  2:607709‑M1/92‑147 (MQ=255)
                                                                                                                                      ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                                                                                                                 <  1:607710‑M1/56‑1 (MQ=255)
                                                                                                                                         tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagat                                                                                             >  1:193356‑M1/1‑92 (MQ=255)
                                                                                                                                         tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagccatcaacttaccttcgccgacagtgaattaagcagtaaccgcactcagacccaaaaagagaat                                                                                            >  2:481062‑M1/1‑92 (MQ=255)
                                                                                                                                         tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                       >  2:691543‑M1/1‑92 (MQ=255)
                                                                                                                                         tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                       <  1:691544‑M1/154‑63 (MQ=255)
                                                                                                                                          cACCGTAAATAATCATCTGCTATAAATAATCCCTTACATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCTCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga                                                                                              <  1:110470‑M1/226‑136 (MQ=255)
                                                                                                                                           aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt                                                                                          >  1:215020‑M1/1‑90 (MQ=255)
                                                                                                                                             cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagcttttct                                                                                        >  1:117713‑M1/1‑88 (MQ=255)
                                                                                                                                                 aataataatTTGCTATAAATAATCACTTTCAAGCAATCCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc                                                                                    <  2:193356‑M1/229‑146 (MQ=255)
                                                                                                                                                 aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt                                                                                     >  1:31153‑M1/1‑84 (MQ=255)
                                                                                                                                                 aataatCATCTGCTAAAAATAATCCCTTTCAGGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgataggagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc                                                                                    <  2:176040‑M1/229‑146 (MQ=255)
                                                                                                                                                    aaacaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAAATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATACTTACATTTCAAATTCTATGATCACCGGGAGTGATTGATTAATTAt                                                                                 <  1:364296‑M1/152‑1 (MQ=255)
                                                                                                                                                       catcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca                                                                               >  1:517495‑M1/1‑78 (MQ=255)
                                                                                                                                                           gggttaaaattatcacttTACTGCAATACCAGATAAGCTATTTTGAAACAGACACTTACCGCATAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccataaaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaggccagaaaagagattttcttgtcccgcatggag                                                                          <  1:30256‑M1/223‑156 (MQ=255)
                                                                                                                                                           ggcTAAAAAAAATCACTTTCAAGCAATCCCAGAAAAGCTATTTTTAAACAGACAAGTACCGCACAAAAAACTAAggaaggtgcgaacaaggccctgatgtgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggag                                                                          <  2:672784‑M1/228‑156 (MQ=255)
                                                                                                                                                             cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgtgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaactcagcagtaagcgccgccagaccagaaatgagattttcttgtcccgcatggagca                                                                        >  1:144252‑M1/1‑72 (MQ=255)
                                                                                                                                                                      atCACTTACAAGCAATACCAAATAAGCTATTTTTAACCCGGCGCCTACCGACCAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaactcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcc                                                               <  2:144252‑M1/229‑167 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccttcaacccagaaaagagattttcttgtcccgcatggag                                                                          >  1:672785‑M1/1‑62 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagacaagggtttatcatgagtcatcaacttaccttcaccgacagagaatcctgcagtaagcgccgtcagcacagaaaagagattttcttgtctctcatggcgcagattccgcca                                                              >  2:405909‑M1/1‑62 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccccatggggcagattctgcca                                                              >  1:103935‑M1/1‑62 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                                                                                                          <  2:441764‑M1/137‑76 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                                                                                                          >  1:441764‑M1/1‑62 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcaggagtcatcaacttaccttcgccgacagtaaattcagcagaaagcgccgtcagcccagaaaaaggattttcttgtcccgaatggaacagattctgcaa                                                              >  1:353995‑M1/1‑62 (MQ=255)
                                                                                                                                                                       tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagataatgtttgtcatctggagccatagaacagggttcatcatgaataataaacttaccttcgccaccagggcattcaccagcacgcgccctcggacccacaaagagcttttcttgtaccgcatggagcaacttctgccc                                                              >  2:30256‑M1/1‑62 (MQ=255)
                                                                                                                                                                                     tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAGggaaggtgcgaacaagtccctgatatgagaccatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagagccgtcagaccagaaaagagattttcttgtcccccatagcggagattccccccgggaaaaacatggg                                                >  2:703430‑M1/1‑48 (MQ=255)
                                                                                                                                                                                     tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcaccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagccgattctgccatggcaaaaaattgt                                                >  2:218149‑M1/1‑48 (MQ=255)
                                                                                                                                                                                               gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatc                                      >  1:141566‑M1/1‑38 (MQ=255)
                                                                                                                                                                                               gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggaccagattctgccagggcaaaacaagggggaagtcacc                                      >  2:688871‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                 tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagggacttcagcagtaagcgccgtcagacccgaacagagattttcttgtcccgcatggagcagattctgccctggcaaaaaattgtggaaattaccg                                     >  2:270580‑M1/1‑36 (MQ=255)
                                                                                                                                                                                                  aTTTTTAAACAGACACTTACCGAACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgag                                   <  1:374951‑M1/229‑195 (MQ=255)
                                                                                                                                                                                                             gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaa                                                      <  1:244762‑M1/199‑176 (MQ=255)
                                                                                                                                                                                                             gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaaaccagaaaagagattttcttgtcccgcatgaagacgattctgccaaggcaaaacatggaggaagacatcgagccggtataccc                        >  2:350915‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                              atcttttccgcacaaaAAACTAAtggaggtgcgaacacggccctgataggagttcagtgttgtcatctggagcaatagaacagggttcaccatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                       <  2:255379‑M1/222‑207 (MQ=255)
                                                                                                                                                                                                              acgcttaCCGGACAAAAAACTAGggaaggtgcgaaaaattccctgatatggaatcatgtttgtcatctggcgcaatagaacggggttcaacatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagggccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                       <  1:703431‑M1/226‑207 (MQ=255)
                                                                                                                                                                                                              acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                       <  1:5786‑M1/229‑207 (MQ=255)
                                                                                                                                                                                                                   tgccgcACAAAAAGCTAAggaagggacgaacaagtccctgatatgagatcatgtttggcatctggggccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggc                  <  2:215020‑M1/227‑212 (MQ=255)
                                                                                                                                                                                                                    aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagcttctgccatggcaaaacatggtggaagtcttcgagccgttttacccccagcct                 >  1:613729‑M1/1‑17 (MQ=255)
                                                                                                                                                                                                                          caacaaCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagccatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagacaagcgattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaatccatcgagccgttttaccccaaggctgtaaa            >  2:514041‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                aCTAAggagggttcaaacacgcccctgattgaagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg     <  2:136821‑M1/229‑225 (MQ=255)
                                                                                                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagacaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatccagccgttttacccccagggtggtaaaggccggg    >  2:534595‑M1/1‑3 (MQ=255)
                                                                                                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgcgccgttttaccccaaggcgggaaatggccgggg   >  2:667853‑M1/1‑3 (MQ=255)
                                                                                                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                                                                                                              <  1:103948‑M1/122‑120 (MQ=255)
                                                                                                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                                                                                                              >  2:103948‑M1/1‑3 (MQ=255)
                                                                                                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatctagccgttttaccccaagactgggaatggccggcga  >  1:132139‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                                                                                                     <  2:62194‑M1/98‑97 (MQ=255)
                                                                                                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                                                                                                     >  1:62194‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                   aaggaaggcgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccctggcaaaacaagggggaagtcatcgagccgttttacccccaggcaggaaaaggccggcgg  >  2:389170‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                   
CAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTT  >  NC_000913/1979261‑1979716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.