Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA ← / → uspC	IS1 repressor TnpA/universal stress protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	32 (0.560)	25/418	NT	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1979489	0 (0.000)	61 (1.070)	41/418	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATG  >  NC_000913/2289889‑2290337                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                 gCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTTGACCCTTCCATaa                                                                                                                                                                                                                              >  1:134196/1‑229 (MQ=9)   cGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAc                                                                                                                                                                                                                             >  1:64078/1‑228 (MQ=31)        attcacAGCTTTGGGGTTAACAGGCTCGATGACTTCCACCATGTTTTGCAAGGGCAGTACCTGCTCCAGGCAGGACAAGAAAATCTCTTTGCTGGTCTGACGGCGCTTACTGCTGAATTTACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCACATATCAGGGACTTGTTCGCAACTTCCATAATGCTGTa                                                                                                                                                                                                                       <  2:573688/224‑1 (MQ=11)         ttacccagctgggggTTAAACGGCTCGCTGACTTCCACCGTGTTTTGCCAAGGCAGAATCTGCTCCAGGCGGAACAAGATAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCTCTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                                                                                                                       <  2:179338/217‑1 (MQ=11)                ccTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAGGCTGTAGCCACCAg                                                                                                                                                                                                               >  1:159348/1‑229 (MQ=37)                   tGGGGTAAAACGGCCTCATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAc                                                                                                                                                                                                            <  1:430772/229‑1 (MQ=255)                    ggggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGAAAAACATGATCTCATATCAGGGACTTGTTCGGCCCTTCCATAAAACAGTAGCCACCAGAACa                                                                                                                                                                                                           >  2:312590/1‑229 (MQ=255)                      ggTAAACCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGa                                                                                                                                                                                                         <  1:588117/229‑1 (MQ=255)                          aaaCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATTTCATATCAGGGACTTGTTCGCACCTTCCAAAAAGCTGAAGCCACCAGAAAAGAAAtt                                                                                                                                                                                                     >  1:42258/1‑229 (MQ=255)                             cGGCTCGATGACTTCCACAGTGTTTTGCCATGGCAGGATCTGCACCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                                                                                                                  <  1:574844/229‑1 (MQ=255)                                cTCGATGACTTCCACCCTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTAT‑GGCTCCAGATGAACAAAATAGACTCATATCAGGGACTTGTTAGCACCTTCCATAACCATGTATCCCCCCCAACAGACATTGCggta                                                                                                                                                                                               >  2:574843/1‑227 (MQ=11)                                cTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGATGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCTGATAACAAACATGATTTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTTCgggc                                                                                                                                                                                               >  1:462789/1‑227 (MQ=255)                                     gtgctcccaccaTGTTTTGCCATGGGAAAATCTGCTACATGCTGGACAAACAAATCTCTTTTCTGGTCTGACGGCGCTTACTTCTGAATTCTCTGTCGGCGAAGGTAAGGTGATGACGCATGATGACCCCTTTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTCGCTCCTTCCATAACGCTGTAGCCACCAGAACTGACACTACGGAACGACa                                                                                                                                                                                          <  2:525308/223‑1 (MQ=14)                                             cccaTGTTTTGCCATTGCAGAATCTCCCCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  <  2:125845/228‑1 (MQ=255)                                              ccaTGGTTTGCCACGGCCGAATTGGCCCCAAGGGGGAAAAGAAAATCGCATCTCTGGTCTGAGGGGGCTTAGTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATACCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGAACGACAAAGAGAAAc                                                                                                                                                                                 <  2:424466/229‑1 (MQ=17)                                                 tGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGAAATTTCGGAACGACAAAGAGAAACaaa                                                                                                                                                                              >  2:443618/1‑227 (MQ=255)                                                                gaaccgggctcATGCGGGACAAGAAAATCTCTTTGCGTGTCTTACGGCGCTTCCTGCTGAATTCCCGGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAt                                                                                                                                                               <  1:651295/219‑1 (MQ=18)                                                                  aTCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCCCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  1:122643/229‑1 (MQ=255)                                                                  aTCTGCCCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGGTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  1:652277/229‑1 (MQ=255)                                                                  aTCTGCCCCATGCGGGAAAAAAAAATCTCTTTGCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGGTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  2:475353/229‑1 (MQ=255)                                                                        tCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATCCATTGAGCttt                                                                                                                                                       >  1:398876/1‑229 (MQ=255)                                                                            tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  >  2:315235/1‑198 (MQ=255)                                                                            tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  <  1:315235/198‑1 (MQ=255)                                                                                      gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATTTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAACCACCAGAACAGAGATTGCGGAACGCCAAAAAAAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaata                                                                                                                                         >  2:491491/1‑228 (MQ=255)                                                                                      gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCATGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACCGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatt                                                                                                                                         >  1:459999/1‑229 (MQ=255)                                                                                            ctctTTTCTTGTCTGACGGCGCTTACTGCGGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  1:324861/228‑1 (MQ=255)                                                                                            cgtttttCTTGTCGTACGTCGTTTTCTGCTGAATTCACTGTCGGAGAAGGGAACTTGATGACTCATGATGAACCCTGTTCTAG‑GGCTCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  2:404123/225‑1 (MQ=25)                                                                                            ccctTTTCCGGTTTGAAGGCCATTACTGCTGAATTCCATGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATAACAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  1:676637/226‑1 (MQ=25)                                                                                                    tGGTCTGACTGCGCTTATTGATTAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                                                                                                           <  2:534965/229‑1 (MQ=255)                                                                                                       tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                                                                                                        <  2:216303/229‑1 (MQ=255)                                                                                                       tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGGTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                                                                                                        <  1:77589/229‑1 (MQ=255)                                                                                                           aCGGCGCTTACTGCTGAATTCACTGTCCGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGAATTTAACTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg                                                                                                                    >  1:377675/1‑229 (MQ=255)                                                                                                                      tgctgAATTCACTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGACCTCATATCAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaaa                                                                                                          <  2:377758/228‑1 (MQ=255)                                                                                                                        ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc                                                                                                       >  1:529892/1‑229 (MQ=255)                                                                                                                            aTTCTCTGTGGGGGAAGGTAAGTTAATGACTCATGATGAACCCTGTTCTAT‑GGCCCCAGATGACAAACATGATCTCATATCAGGTACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCa                                                                                                    <  2:648881/228‑1 (MQ=255)                                                                                                                            aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAt                                                                                                   <  1:3813/229‑1 (MQ=255)                                                                                                                                   ggcGGCGAAGGTAAGTTGATGACTCAAGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            <  1:620894/227‑1 (MQ=255)                                                                                                                                       gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATAc                                                                                         >  1:639946/1‑229 (MQ=255)                                                                                                                                                aGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAg                                                                               >  1:155429/1‑229 (MQ=255)                                                                                                                                                       gaCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCCTTGAGCTTTCATCCTAAGAAATTAATTGCTGTTAAAAGCACTGGGTACAGAAAATCCCCATAGCTCCAAACCCGGATGCATGTTTTaa                                                                        >  2:462057/1‑229 (MQ=38)                                                                                                                                                         ttCATTATTAACCCTCTTCTAT‑GCGTCCAGAGGAAAAATATGAACCCATACACGGGCCTTGGTCTCCCTTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaa                                                                       <  2:658381/227‑1 (MQ=255)                                                                                                                                                          tCATGATGACCCTTGTTTTAT‑TGCCCCCGATGACAAACATGATCTCATATCAGGGACTTGTTCGAACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaaaa                                                                     <  2:756345/229‑1 (MQ=255)                                                                                                                                                           cacggtggaCCCTGTTCTATGGGCTCCAGATTGAAAACATGATCCTATATCAGGGACTTGGTCGCACCGTCCAAAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaaaa                                                                     <  2:639945/221‑1 (MQ=255)                                                                                                                                                                 gaACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTa                                                              <  1:411592/229‑1 (MQ=255)                                                                                                                                                                 gaACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTa                                                              <  1:443618/229‑1 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGTGACAGAAAATACCCATAGCTCCATACCCGGGGTCAGTTTTTAAAAACTGTTTAAAg                                                           >  1:561097/1‑229 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCCTGGCTCCATACCCGGGGTCAGTTTTTAAAAACTGTTTAAAg                                                           >  1:454331/1‑229 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTAATCCTATGAAATTAATTGCTGTTACAAGCATTGGGTACAGAAAATACCCTGAGCTCCATACCCGGGGTAAGTTTTTAAAACATGTTTaacg                                                           >  1:756346/1‑227 (MQ=38)                                                                                                                                                                            ttt‑GGCTTCAGATTATAAACTTGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACCCTGGAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGcac                                                   <  2:134196/227‑1 (MQ=255)                                                                                                                                                                            tAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTTAGCTTTCATCCTATGAAATTAATTGATGTTAAAAGCATTGGGCACAGAAAATACCCAAAGCTCCATACCCGAAGTCACTTTTTAAAAACGTTTTAAACAAAtacca                                                   >  2:358731/1‑225 (MQ=39)                                                                                                                                                                            tAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATgaaa                                                   >  2:575299/1‑226 (MQ=255)                                                                                                                                                                            tAT‑GGCCCCAAATTGCAAACATGATCCCAAAACCGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCAGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGcac                                                   <  2:491509/229‑1 (MQ=255)                                                                                                                                                                              t‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGCTGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTCCAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAACCTGTTCAAAAAAATgacaaa                                                 >  2:53795/1‑224 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTAtt                                            >  1:88841/1‑229 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGAAtt                                            >  1:204652/1‑229 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGAACAAGAAtt                                            >  1:299133/1‑229 (MQ=255)                                                                                                                                                                                                           atCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTCCAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGAACACGTATTGTGATTGATTTTTTAGTTGtttt                     >  1:432559/1‑229 (MQ=255)                                                                                                                                                                                                           atCAGGGACTTGTTCGCACCTTCCATAACGCTGCAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGTAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACTCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGTGATTGATTTTTTAGTTGtttt                     >  1:579582/1‑229 (MQ=255)                                                                                                                                                                                                               gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGAATGGTGATTGATTTTTTAGTTGtttttttt                 >  2:268788/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGGAACAGAATCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGTAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTTAGGTGGATTTTTTAGTTGTTTTTCTtg                >  2:636930/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            >  1:710996/1‑153 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            <  2:710995/153‑1 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg                >  1:496221/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg                >  1:725525/1‑229 (MQ=255)                                                                                                                                                                                                                   cTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTCAAGAAATGCACACGTATTGGGATTGATTTTTTAGTTGTTTTTTTtgacg             >  2:207627/1‑227 (MQ=255)                                                                                                                                                                                                                    ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGGGATTGATTTTTTAGTttttttttttataga            >  2:651253/1‑224 (MQ=255)                                                                                                                                                                                                                            cccTTCCATAACGCGTGAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTg     <  2:529892/227‑1 (MQ=255)                                                                                                                                                                                                                                tCCATAACGCTGTAGCCACCAGAATAGATATTGCGGAACCACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAACTGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATg  >  1:323219/1‑227 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                 GCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATG  >  NC_000913/2289889‑2290337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.