mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3886863 | 230 (1.430) | 6 (0.040) | 6/506 | NT | 2.5% | coding (36/1365 nt) | mnmE | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| ? | NC_000913 | = 3886872 | 237 (1.500) | coding (45/1365 nt) | mnmE | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase | |||||
| * | ? | NC_000913 | = 3846154 | 250 (1.550) | 3 (0.020) | 3/508 | NT | 1.2% | coding (1014/1392 nt) | uhpT | hexose phosphate transporter |
| ? | NC_000913 | = 3846162 | 253 (1.600) | coding (1006/1392 nt) | uhpT | hexose phosphate transporter | |||||
| * | ? | NC_000913 | 3515982 = | 178 (1.100) | 5 (0.030) | 5/500 | NT | 3.1% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | NC_000913 | 3516010 = | 145 (0.930) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | NC_000913 | 3368970 = | 148 (0.920) | 4 (0.030) | 4/494 | NT | 2.9% | intergenic (+16/+44) | yhcG/yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| ? | NC_000913 | 3368995 = | 125 (0.810) | intergenic (+41/+19) | yhcG/yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily | |||||
| * | ? | NC_000913 | 3233223 = | 119 (0.740) | 3 (0.020) | 3/500 | NT | 2.5% | coding (1559/2019 nt) | fadH | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| ? | NC_000913 | 3233293 = | 121 (0.780) | coding (1629/2019 nt) | fadH | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked | |||||
| * | ? | NC_000913 | 3140343 = | 161 (1.000) | 4 (0.030) | 4/502 | NT | 2.5% | coding (457/489 nt) | hybE | hydrogenase 2‑specific chaperone |
| ? | NC_000913 | 3140362 = | 152 (0.970) | coding (438/489 nt) | hybE | hydrogenase 2‑specific chaperone | |||||
| * | ? | NC_000913 | 2765420 = | 111 (0.690) | 3 (0.020) | 3/430 | NT | 2.9% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 109 (0.810) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 2562181 = | 115 (0.710) | 3 (0.020) | 3/496 | NT | 2.5% | coding (71/417 nt) | yffO | CPZ‑55 prophage; uncharacterized protein |
| ? | NC_000913 | 2562379 = | 123 (0.800) | coding (269/417 nt) | yffO | CPZ‑55 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 2521359 | 140 (0.870) | 3 (0.020) | 3/420 | NT | 2.6% | intergenic (+31/+234) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB |
| ? | NC_000913 | 2521516 = | NA (NA) | intergenic (+188/+77) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | = 1869162 | 165 (1.020) | 4 (0.030) | 4/506 | NT | 2.4% | coding (208/1284 nt) | yeaH | UPF0229 family protein |
| ? | NC_000913 | = 1869167 | 162 (1.030) | coding (213/1284 nt) | yeaH | UPF0229 family protein | |||||