mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3538842 = | 148 (1.270) | 3 (0.030) | 3/494 | NT | 2.0% | coding (1458/2322 nt) | yhgF | putative transcriptional accessory protein |
| ? | NC_000913 | = 3538838 | 147 (1.290) | coding (1454/2322 nt) | yhgF | putative transcriptional accessory protein | |||||
| * | ? | NC_000913 | = 3261458 | 117 (1.010) | 3 (0.030) | 3/482 | NT | 2.6% | coding (961/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| ? | NC_000913 | = 3261641 | 116 (1.040) | coding (778/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase | |||||
| * | ? | NC_000913 | = 3038108 | 141 (1.210) | 4 (0.040) | 4/494 | NT | 3.0% | intergenic (‑2/+4) | recJ/dsbC | ssDNA exonuclease, 5' ‑‑> 3'‑specific/protein disulfide isomerase II |
| ? | NC_000913 | = 3038914 | 117 (1.030) | coding (830/897 nt) | xerD | site‑specific tyrosine recombinase | |||||
| * | ? | NC_000913 | = 2818081 | 73 (0.630) | 3 (0.030) | 3/492 | NT | 2.7% | noncoding (55/77 nt) | argZ | tRNA‑Arg |
| ? | NC_000913 | = 2818569 | 141 (1.240) | noncoding (77/93 nt) | serV | tRNA‑Ser | |||||
| * | ? | NC_000913 | 2657205 = | 157 (1.350) | 3 (0.030) | 3/486 | NT | 1.8% | coding (1731/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | NC_000913 | = 2658215 | 177 (1.580) | coding (721/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | NC_000913 | = 395765 | 111 (0.950) | 3 (0.030) | 3/486 | NT | 2.7% | coding (523/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| ? | NC_000913 | = 395835 | 113 (1.010) | coding (453/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase | |||||
| * | ? | NC_000913 | = 216139 | NA (NA) | 4 (0.030) | 4/498 | NT | 3.2% | intergenic (+160/+40) | nlpE/yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| ? | NC_000913 | 216143 = | 122 (1.050) | intergenic (+164/+36) | nlpE/yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein | |||||