Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp	100%		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	77 [0]	[0] 77	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	74 (1.550)	53/394	NT	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACG  >  NC_000913/3815714‑3816167                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    agatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                                                                                                                     <  2:366701‑M2/1‑1 (MQ=255)       cgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgcccctaatcttacttttctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagttttcccgcgccgccttctgcCGCcccc                                                                                                                                                                                                                               >  2:468640‑M2/222‑228 (MQ=255)       cgcccggtattaaacagcccggcgttgaagaaataagggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                                                                                                                                                               >  1:178332‑M2/222‑228 (MQ=255)          ccggtattaaacagcccggctttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                             <  1:614890‑M2/9‑1 (MQ=255)             gtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaagcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcctcCGTCCCCCGCAc                                                                                                                                                                                                                          >  2:615616‑M2/216‑227 (MQ=255)                        cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaatttaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                                                                                                            >  2:118333‑M2/205‑214 (MQ=255)                        cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaatgccactcatcagtcgccttaaaaatcattttgacagcgccgccttcttcCGTCCCCTGCACttcaatgaatga                                                                                                                                                                                                              >  2:230302‑M2/205‑224 (MQ=255)                        cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttccgcCGCCCCCTGCACTTCAATGATgc                                                                                                                                                                                                               >  2:168766‑M2/205‑227 (MQ=255)                        cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccaccgccgccttctccCGTACCCTGCACTTcaataatggg                                                                                                                                                                                                              >  2:638711‑M2/205‑226 (MQ=255)                        cccggcgttgaagaaataggggcttttgagcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgacttcactcatcatcttacttttctacagccaaaaaaaaggcgactcatcagtcgccttaaaaattagttcgccatcgcccacttctgcGGTCCCCTGCACTTCAATCATacg                                                                                                                                                                                                              >  1:53695‑M2/205‑228 (MQ=255)                         ccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaatttaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                                                                                                           <  1:118333‑M2/11‑1 (MQ=255)                         ccggcgttaaaaaaaaaggggcgtttgcgcacggatctccgcggaaactcgccaagctttaacacctgcttgctaagcgcaaattcaagaaactggcgctgataggttttcatgccttcgctcctcatcgtacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                                                                                                             <  2:611350‑M2/25‑1 (MQ=255)                          cggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                                                                                                             <  1:468640‑M2/25‑1 (MQ=255)                          cggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcacccttctgcCGCCCCCTGCACGTCAATGATGCGcc                                                                                                                                                                                                            >  1:651876‑M2/203‑228 (MQ=255)                                 gaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                                                                                                                                                 >  1:633126‑M2/196‑200 (MQ=255)                                  aagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                                                                                                                <  2:633126‑M2/6‑1 (MQ=255)                                    gaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                                                                                                                    <  1:63506‑M2/34‑1 (MQ=255)                                      aataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                                <  1:586070‑M2/38‑1 (MQ=255)                                       ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttcccatcgccgccttctccCGTCCCCTGCACTTCAATGATGCGCCCCTCTTCGGtcat                                                                                                                                                                                               >  1:590319‑M2/190‑228 (MQ=255)                                            ggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttacaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATCCACCCGTCTTCGATCATCACTa                                                                                                                                                                                          >  1:170348‑M2/185‑228 (MQ=255)                                            ggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa                                                                                                                                                                                          >  1:324248‑M2/185‑228 (MQ=255)                                              cttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgccaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccatcgcccccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGCCATCACTA‑c                                                                                                                                                                                        >  2:78816‑M2/183‑227 (MQ=255)                                                tttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaacttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagccaaaaaaaaggcgacttatcagtcgccttacaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTC‑CGt                                                                                                                                                                                      >  1:460706‑M2/181‑227 (MQ=255)                                                tttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaattaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccaccgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGCCTTCGGCCATCTCTC‑CGt                                                                                                                                                                                      >  1:52415‑M2/181‑227 (MQ=255)                                                     gcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccatctgcCCTACCCTGCACTTCAATTATGCGCCCGTCTTCGGTCACACCTA‑CGTTCAtgc                                                                                                                                                                                >  2:579963‑M2/176‑227 (MQ=255)                                                          gatttcagtgtaaacctgccaacattaaaccccgtcttgctaagcgcaaaatcaatgacctggcgctgataggggttcatgccttcgctcctcatcttacttttctacagacaaaaaaagggcgacgcagcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGt                                                                                                                                                                            <  2:33808‑M2/57‑1 (MQ=255)                                                           atttcagcgtaaactcgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGtct                                                                                                                                                                          <  1:169850‑M2/59‑1 (MQ=255)                                                           atttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGtct                                                                                                                                                                          <  1:544780‑M2/59‑1 (MQ=255)                                                           atttcagcgtaaactcgccaaacttgaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGtct                                                                                                                                                                          <  1:617502‑M2/59‑1 (MQ=255)                                                                   gtaaactcgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCa                                                                                                                                                                  <  1:242901‑M2/67‑1 (MQ=255)                                                                   gtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTC‑CGTTCATTTCGGTTCCTGCGGc                                                                                                                                                                   >  1:549475‑M2/162‑227 (MQ=255)                                                                     taactccccaaactttaacccctgcttgctaagcgcaaattaaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttgtctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                                <  2:651876‑M2/69‑1 (MQ=255)                                                                     aaactctccaacatttaacccctgtttgctaagcgcaaattcaataaactggccctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgacccatcagtcgccttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                                <  2:558627‑M2/69‑1 (MQ=255)                                                                      aacccgccaaactttagcgccttgctgcgaagggcaaattcaaaagactggcgctgttgttgtttcctgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                                <  2:52415‑M2/69‑1 (MQ=255)                                                                          ctccaacacttaacccctgcttgctaagcggaaattcaaaaaactggcgatgatatggtttcatgccttcgcccctcatcttacttttctacaggcaaaaaaaaggcgactcatcagtcgacttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                                                                                                           <  2:368368‑M2/74‑1 (MQ=255)                                                                            ccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGCAAGAGTCTTCa                                                                                                                                                         >  1:412619‑M2/153‑228 (MQ=255)                                                                                            gcttgctaagcgcacattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTC‑CGTTCATGTCGGTCTCTGCGTCAGAGTCTTCAACGGattccaagtcc                                                                                                                                          >  1:244086‑M2/137‑222 (MQ=255)                                                                                            gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAtcc                                                                                                                                          >  1:24441‑M2/137‑226 (MQ=255)                                                                                            gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGCCGGTCCCTGCGGCAGAGTCTTCACCCGattccaaaccc                                                                                                                                          >  2:262301‑M2/137‑222 (MQ=255)                                                                                                    agcgcaaattcaataaactggcgctgatatggattcatgccttcgctcctcatcttacttttctacagacaaaacaaaggagactcatcagtcgccttcaaaatcagtttgccagcgccgccttctgcCGTCCCCTTCACTTCAATGATGCGCCCGTCTCCGTTCATCACTA‑CGATCCTGTCATTCTCTGCGGCCGAGTCTTTCACGTATTCCAAAACGCAAACCGCt                                                                                                                                 >  2:189950‑M2/129‑228 (MQ=255)                                                                                                      cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                                                                                                               >  1:551571‑M2/127‑228 (MQ=255)                                                                                                              taataaactggcgtttatatggtttcatgccttcgctcctcatcttcattttgatcagacaaaaaaaaggcgacccatcagtcgccttaaaaatcagtttgccagggccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                                                                                                       <  2:590319‑M2/110‑1 (MQ=255)                                                                                                                      tggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCGAATTCCg                                                                                                               >  1:431449‑M2/111‑228 (MQ=255)                                                                                                                       ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCg                                                                                                               >  1:393113‑M2/110‑228 (MQ=255)                                                                                                                        ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                                                                                                                >  2:623559‑M2/109‑114 (MQ=255)                                                                                                                         gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                                                                                                                                                               <  1:623559‑M2/7‑1 (MQ=255)                                                                                                                                       catgccttcgctcctcatcttacttttctacagacaaaaaaaaggccactcatcagtcgctgtaaaaatcagtttgccagcgcctccttctgcCGTCCCCTTCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCTGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                                                                                                        <  1:351002‑M2/109‑1 (MQ=255)                                                                                                                                       cacttcttcgacccacatcttgcatttccgcaagcaaaaaaaaggcgcctcactggactccttaaaaatcagtttgccagcgccgcattctgcCGTCCCCTGCCCGTCAATGATGCGCCCGTCTGCGGTCATCACTA‑GGTTCATGTCGTTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTa                                                                                               <  2:53695‑M2/134‑1 (MQ=255)                                                                                                                                        atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTCCTCCGTTCACAATTACGCCAGAAactgcgcgtga                                                                                              >  1:502982‑M2/93‑222 (MQ=255)                                                                                                                                        atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑AGTTCCTGTCGGTCTCTGCGGCAGAGTATTCACCGGATTCCAGATCCCAAAACGCTTCCCCGTTCACCATTCCGACAGAAACTGCGGCTAcc                                                                                             >  2:425922‑M2/93‑228 (MQ=255)                                                                                                                                         tgccttcgctcctcatcttacttttctacagacaaaaaaaagtcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa                                                                                            >  1:555396‑M2/92‑228 (MQ=255)                                                                                                                                         tgccttcgctcctcatcctacgtttccaccgacaaaaaaaaggcgactcatcagtcgtcttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa                                                                                            <  1:246398‑M2/137‑1 (MQ=255)                                                                                                                                          tccctccctcctcatttttcttttacacagacaaaaaaaaggctgctcatcaggcgccttaaaactcagtttgccagcgccgacttctgcCTTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACGA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa                                                                                            <  2:502982‑M2/137‑1 (MQ=255)                                                                                                                                             ttcgctcctcatcttactttttctcagacaaaaaaaaggcgactcatcagtcgccttaaaaagcagtttgcccgcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc                                                                                        <  2:324248‑M2/141‑1 (MQ=255)                                                                                                                                             ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGCATTCCAGATCGCAAACCGCTTCGCCGTTACCAATTCCGACAAAAAATGCGGCCACCAcccc                                                                                        >  2:395929‑M2/88‑228 (MQ=255)                                                                                                                                                        tgtgtacttttcacagacaaaaaaaaggctactcatcaggcgacttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGGACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCTGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGAt                                                                             <  1:160966‑M2/152‑1 (MQ=255)                                                                                                                                                        tcttattttttcacagacaaaaaaaaggcgacccaacagtcgtcttaaaaatcagtttgcccgcgccgccttctgcCGTCCCCTGGACTTCAATGATGCGCCCGTCTTCGGTCATCACTT‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGAt                                                                             <  2:587801‑M2/152‑1 (MQ=255)                                                                                                                                                                 tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCCCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACACTCCCTTTAATCGGATTGGTTTTc                                                                     >  1:230171‑M2/68‑227 (MQ=255)                                                                                                                                                                  ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt                                                                                       >  2:426496‑M2/67‑208 (MQ=255)                                                                                                                                                                   taaagacaaaaaaaaggcgacccatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCtt                                                                                      <  1:426496‑M2/143‑1 (MQ=255)                                                                                                                                                                    acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGAGGCTACCATCCCTTTCATCGGATTGGTTTTCACCt                                                                 >  1:11352‑M2/65‑228 (MQ=255)                                                                                                                                                                     cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGCCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTCCCAATTCCCACCGAAACCGCGGCCACCATACCCTTCACCGGATTGGgtttcgcct                                                                 >  2:238486‑M2/64‑223 (MQ=255)                                                                                                                                                                        acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTC‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAACCTGCGGCTACCATCCCTTTCACCGGCTTGGTTTTCACCTTGc                                                              >  1:241304‑M2/61‑227 (MQ=255)                                                                                                                                                                        acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGcc                                                             >  2:520960‑M2/61‑228 (MQ=255)                                                                                                                                                                        acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGc                                                              >  1:5574‑M2/61‑227 (MQ=255)                                                                                                                                                                        acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATCTCCGTCTCTGCGGCAGAGTCTTCACCGTATTCCAGATCGCAAACCGCTTCCCCGTTCCCCATTCCTCCCGAAACTGCGCCTCCCATCCCTTTCATCGGCTTGgttttcaaattcc                                                              >  2:57151‑M2/61‑221 (MQ=255)                                                                                                                                                                                      actcatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCACAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTACCAGTTCCGCCCGACACTGCGGCCACCATCCCTTTCACCGGATAGGGTTTAGACTTGCcgttttccccaccc                                                >  2:112475‑M2/47‑221 (MQ=255)                                                                                                                                                                                           tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGt                                          <  1:520960‑M2/187‑1 (MQ=255)                                                                                                                                                                                            tcgtctccttaaaaattagtttgccagcgccgccttctgcCGTCCCCTGCACGTCAATGATGCGCCCTTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTa                                         <  1:189950‑M2/188‑1 (MQ=255)                                                                                                                                                                                                  ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCa                                    >  1:389298‑M2/35‑227 (MQ=255)                                                                                                                                                                                                  ccttaaaaagcaggttgcccgcgccccctttggcCGTCCCCTGCACTTCAATGATGCGCCCGGCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTTAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCa                                    <  1:78816‑M2/193‑1 (MQ=255)                                                                                                                                                                                                    ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCTCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGAATGGTTTTCAGCTTGCCGTTTTCCACCCGCTTCtgaagcgccaca                                 >  2:231483‑M2/33‑224 (MQ=255)                                                                                                                                                                                                         aatcagtttgccagcgcccgcttcggcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAg                            <  1:504770‑M2/201‑1 (MQ=255)                                                                                                                                                                                                           tcattttgccagcgcccccttcgtcCGTCCCCTGCTCTTCAATGAGTCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAgcg                          <  2:555396‑M2/203‑1 (MQ=255)                                                                                                                                                                                                             agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTCCCAgcgc                         >  1:535872‑M2/24‑227 (MQ=255)                                                                                                                                                                                                                 tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTCCGGCTACCATCCCTTTCATCGGATTGGGTTTAACCTTGCCGTTTTCCACCATCTTCTGTAGCCCATctaccacagcc                        >  1:327511‑M2/20‑219 (MQ=255)                                                                                                                                                                                                                                   cCGTCCCCTGCCCTTCAATGTTGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACg  <  1:262553‑M2/227‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA‑CGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACG  >  NC_000913/3815714‑3816167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑