New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2852113	45 (0.640)	3 (0.040)	3/410	NT	6.1%	coding (250/273 nt)	hypC	hydrogenase maturation protein
	?	NC_000913	= 2852157	49 (0.720)					coding (22/1122 nt)	hypD	hydrogenase maturation protein

TTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGT  >  NC_000913/2851877‑2852347                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           ttCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCGGCGATGAAAACGGCCAGCCGCGCGTGGGCCAGGGGGTACTGGTACACGTTGGCTTTGCCATGAGCGAAATTAATGAGGCCGAGGCACGAGCAACCATCGCACCATTCCACAACATGTTTGGCGTTGAGCCGGAGGTCGGGGCGCgg                                                                                                                                                                                                                                          >  2:732467‑M1/1‑237 (MQ=255)   cccGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgtt                                                                                                                                                                                                                                        >  1:887137/1‑239 (MQ=255)            aTCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCCTGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACCAAACATGTTTGACGTTGAGCCGGAGGTCGGCGCGCTGTTGTATGGCgc                                                                                                                                                                                                                               >  1:436135/1‑238 (MQ=255)            aTCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGGTGAGCCGGATGTAGGCGCGCTGTTGAATGGCGa                                                                                                                                                                                                                               >  1:549274/1‑239 (MQ=255)             gcggCACCATGGCCGGCAACCGGGCGAAAGGCGTGGTCGGCGGCATTCAGCGGCATGGCGGTTTAACGTTGGGCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGGGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACAAGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCg                                                                                                                                                                                                                                <  2:200393/234‑1 (MQ=255)                      ttGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg                                                                                                                                                                                                                              >  1:740574/1‑230 (MQ=255)                      ttGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg                                                                                                                                                                                                                              <  2:740574/230‑1 (MQ=255)                            gccaCCGGGGGACAGTTGACGGCTGCGGAATGCAGCGCGATTGCGATTTAAGCTATGTCGGACGCTGCGATTAAAACGGTCAGGCGCGTTTGGGCCAGTGGTTACTGGTACCTGTTGTCTTTGCCAAGTGCGTAATGAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGGTGAGCCGTATGTCGGAGCGCTGTTGTATGGCGAGGAAAAATAATGCGtt                                                                                                                                                                                                               <  2:688390/236‑1 (MQ=255)                                ccAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGCTGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGGGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGGCGGCGGGCTGTTGTTTTGCGAGGAAAAATAATGCGTTttgt                                                                                                                                                                                                           >  1:580467/1‑239 (MQ=255)                                ccAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAGACCATGTTTGTCGTTGAGCCGGATGACGGCCCGCGCTTGTATGGCGAGGAAAAATAATGCGTAttgt                                                                                                                                                                                                           >  1:412097/1‑239 (MQ=255)                                 cAGGCGAAAGTGGACGTGTGCGGAATTCCGGGCGAGGTCGATTTAACGTTGATCGGCAGCTGCGATGAAAACGGTCAGCCGCGGGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcg                                                                                                                                                                                                          <  2:634375‑M1/239‑35 (MQ=255)                                                gTCTGCGGAATTCAGCTCTTTGTGGATTTAAGGTTAGTCGGCAGGTTAGATGAAAACGGTCAGCCCGGCGTGGGCCAGTGGGTACTGGTACACGTTGGATTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgc                                                                                                                                                                                            >  2:10305‑M2/1‑234 (MQ=255)                                                  cTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACCTGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGCGGAAAAAAAATGCGTTTTTTTGATGAATAACgcgcccc                                                                                                                                                                                         <  2:906786‑M2/239‑8 (MQ=255)                                                                           ttAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAAGATCGCGCGCCGGAACAGGTGATGCAGTTAAtt                                                                                                                                                                   <  1:732467/236‑1 (MQ=255)                                                                               cGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGGACATc                                                                                                                                                            >  2:863297/1‑239 (MQ=255)                                                                                       ggCAGATGCGATGAAAACGGTCAGCCGCGGGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa                                                                                                                                                     <  1:367014/238‑1 (MQ=255)                                                                                         cAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACg                                                                                                                                                  >  1:487770/1‑239 (MQ=255)                                                                                                             cgggggcggTGGGCCGGTGGGGTCTGGTCAAGGTTGGGTTTGCCATGGGGTTAATTAAGGCAGGCGAAGCACCCGGCTCTCTCGGCGCTTTAAAAAACATGTTTGACGTTGAGCCGGAGGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTaca                                                                                                                              <  2:644333/231‑1 (MQ=255)                                                                                                             aGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCGCGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGCGGCAAAATAATGCGTTTTGTTGATGAATATCGCGCCCCGGAACAGGGGATGAAGTTAATTGGGACTCTGCGCAAACGGGCTTcacaaacacattaa                                                                                                                               >  2:348370/1‑228 (MQ=255)                                                                                                                                   aCTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcg                                                                                                                                                                                             >  1:895012‑M1/1‑107 (MQ=255)                                                                                                                                   aCTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGTACAGGTGATGCAGTTAATTGAGCATCTCGGCGAACGGGCTTCAAAACCCTTTTAAACCGCCGCACAcccccccgggat                                                                                                        >  2:907970/1‑230 (MQ=255)                                                                                                                                   aCTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCCCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTCCGCGAACGTGCTTCACTTCTCTCTTCCACCGCCGACCGCCCTCTGCggtt                                                                                                        >  1:440599/1‑237 (MQ=255)                                                                                                                                   aCTGGTACACGTTGGCTTTGCCATGAGCGGAATTAATGAAGCCGAAGCACGCGACACTCTCGAAGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcg                                                                                                                                                                                             <  2:895012‑M1/154‑48 (MQ=255)                                                                                                                                       gtaccggTTGGTTTTGCCATGGGAGTAATTAATGAAGCCGAAGACGGGGACCCTCTTGACGCGTTACAAAACATGTTTGACGTTGGGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATg                                                                                                    <  2:846839/233‑1 (MQ=255)                                                                                                                                          cacGTTGGCTTTGCCATGGGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGaa                                                                                                 <  1:906786/239‑1 (MQ=255)                                                                                                                                            cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGGGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                              >  2:585010/1‑224 (MQ=255)                                                                                                                                            cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                              <  1:585010/224‑1 (MQ=255)                                                                                                                                            cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCACTCTTACACCTCCGAACGCCCTCTGCGGGTATTGGAAgt                                                                                               >  1:278799/1‑239 (MQ=255)                                                                                                                                               tGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGGGCTTCACATCTCTCTTACCCCCCCGAACCCCCCCTGCGGTTTAAGGaaagggg                                                                                            >  2:789952/1‑234 (MQ=255)                                                                                                                                                   tttGCCAGGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTgg                                                                                         <  1:736026/238‑1 (MQ=255)                                                                                                                                                     tGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGAGCATTTGCCCGAACGGGCTTCCCATCCCTCTTAAACCGCCAGACGCCCCCTCGGGATTTTGGAAGGGGGTGgggg                                                                                      >  2:804054/1‑239 (MQ=255)                                                                                                                                                            aGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTAGGGAAGTGTGGGGCGGTccaac                                                                                >  2:869698/1‑234 (MQ=255)                                                                                                                                                                 aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt                                                                                                                                                                             <  2:98095/140‑1 (MQ=255)                                                                                                                                                                 aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt                                                                                                                                                                             >  1:98095/1‑140 (MQ=255)                                                                                                                                                                 aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACg                                                                           <  1:804054/238‑1 (MQ=255)                                                                                                                                                                 aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGAGCATCTGCGGGAACGGGCTTCCCATCCCTCTTACACCGCCCACAGCCCTCGGCGGCGTTTGGAAGGGGGGGGCGGTCAATCCCAccg                                                                          >  2:889996/1‑237 (MQ=255)                                                                                                                                                                  attaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCt                                                                         <  1:863297/239‑1 (MQ=255)                                                                                                                                                                   ttaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTAAACTGCCGAACGCCCTCTGCGGGTTATGGAAGTGTGTGGCGGTCATACCCCCGCtt                                                                        >  1:539675/1‑238 (MQ=255)                                                                                                                                                                           gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGTGGATGAAGTTAATTGCGCCTCTCCGCGAACGTGCTTCACATCTCTCTTACCCCGCCGAACGCCCTCTGCGGATTATGGAAGAGGTTGGCGGTACCACCAACCCCATCTTTaaa                                                                >  2:434442/1‑239 (MQ=255)                                                                                                                                                                                   aCGGGACACTCTCGACGCATTACAAAACCTTTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGTAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCGCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCt                                                        <  2:539675/239‑1 (MQ=255)                                                                                                                                                                                                      ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACAGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCACACCCCCCCGCTCTTTAAATTCTGCCCCACCCAGTTCATCCCGGaa                                     >  2:175560/1‑239 (MQ=255)                                                                                                                                                                                                              tgtttttGAGTTTGTGCGGGGTGTGGGGGCGCTGTTGGAGGGGGAGGAAAAATAATGGGTGTGGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTCTGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGt                                <  2:364754/232‑1 (MQ=255)                                                                                                                                                                                                               aTGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGGATGGAGAAGAAAAATAAGGCGTTTTGTTGATGAATATCGCGGGCCGGAACAGGTGAGTCAGTTAATGGAGCATCTGCGCTAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAg                            <  1:181973/239‑1 (MQ=255)                                                                                                                                                                                                                 gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa                                                                                                                                                                                      >  2:414835/1‑83 (MQ=255)                                                                                                                                                                                                                 gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa                                                                                                                                                                                      <  1:414835/83‑1 (MQ=255)                                                                                                                                                                                                                 gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCCCCGAACGCCCTCTGCGGATTATGGAAGTGTGGGGCGGCCATACCCCCGCCATCTTTAAATTCAGCGCCGACCAGGTAAGTCCGGAAAAAGGTGAGtt                          >  2:204517/1‑239 (MQ=255)                                                                                                                                                                                                                   ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGtttt                        >  1:754215/1‑238 (MQ=255)                                                                                                                                                                                                                       cGTTGAGCCGGATGGCGGCGGGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATcc                     <  1:789952/238‑1 (MQ=255)                                                                                                                                                                                                                        gtggAGCCGGATGTCGGCGCGCTGTTGGATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCa                    <  1:622347/235‑1 (MQ=255)                                                                                                                                                                                                                        gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGGGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCa                    <  1:907970/238‑1 (MQ=255)                                                                                                                                                                                                                        gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTTTGGAAGGGTGTGGCGGGCTCACCCCCGCTATCTTCTAATTCGGCCCCGCCCAGTTAATGCCGGAAAACGATGAGtttcatcct                   >  1:364754/1‑233 (MQ=255)                                                                                                                                                                                                                                      gggCGCGCTTTTTTAAGGGGAGGAAAAATAAGGGGTTTTGTTTATGAATTACGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGGGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGccc     <  2:487770/238‑1 (MQ=255)                                                                                                                                                                                                                                       ggggcgcgttattcatcaaaaaaacgcattttttttccgcgccatacaacagcgcgccgacatccggctcaacgtcaaacaggttttgtaaggcgtcgagagtgtcgcgtgcttcggcttcattaattacgctcatggcaaagccaacgtgtaccagtacccactggcccacgcgcggctgaccgttttcatcgcagctgccgactaacgttaaatcgacatcgcgctgaatgccgcag    <  2:906786‑M1/236‑233 (MQ=255)                                                                                                                                                                                                                                          gcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcgtcgagagtgtcgcgtgcttcggcttcattaattacgctcatggcaaatccaacgtgtaccagtacccactggcccacgccgggctgaccgttttcatctaacctgccgactaaccttaaatccacaaagagctgaattccgcagac  >  2:10305‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                           cgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcttcgagagtgtcgcgtgcttcggcttcattaattccgctcatggcaaagccaacgtgtaccagt                                                                                     <  2:895012‑M2/154‑108 (MQ=255)                                                                                                                                                                                                                                           cgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcgtcgagagtgtcgcgtgcttcggcttcattaattacgctcatggcaaagccaacgtgtaccagt                                                                                     >  1:895012‑M2/1‑47 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           TTCCCGGCCAGATCCGCACCATTGACGGCAACCAGGCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGT  >  NC_000913/2851877‑2852347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.