New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2852113	45 (0.640)	3 (0.040)	3/410	NT	6.1%	coding (250/273 nt)	hypC	hydrogenase maturation protein
	?	NC_000913	= 2852157	49 (0.720)					coding (22/1122 nt)	hypD	hydrogenase maturation protein

GTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTAGAATCGACACCTGCGTGGAGATTGCCA  >  NC_000913/2851924‑2852394                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              gTCTGCGGAATTCAGCTCTTTGTGGATTTAAGGTTAGTCGGCAGGTTAGATGAAAACGGTCAGCCCGGCGTGGGCCAGTGGGTACTGGTACACGTTGGATTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgc                                                                                                                                                                                                                                           >  2:10305‑M2/1‑234 (MQ=255)   cTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACCTGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGCGGAAAAAAAATGCGTTTTTTTGATGAATAACgcgcccc                                                                                                                                                                                                                                        <  2:906786‑M2/239‑8 (MQ=255)                            ttAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAAGATCGCGCGCCGGAACAGGTGATGCAGTTAAtt                                                                                                                                                                                                                  <  1:732467/236‑1 (MQ=255)                                cGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGGACATc                                                                                                                                                                                                           >  2:863297/1‑239 (MQ=255)                                        ggCAGATGCGATGAAAACGGTCAGCCGCGGGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa                                                                                                                                                                                                    <  1:367014/238‑1 (MQ=255)                                          cAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACg                                                                                                                                                                                                 >  1:487770/1‑239 (MQ=255)                                                              cgggggcggTGGGCCGGTGGGGTCTGGTCAAGGTTGGGTTTGCCATGGGGTTAATTAAGGCAGGCGAAGCACCCGGCTCTCTCGGCGCTTTAAAAAACATGTTTGACGTTGAGCCGGAGGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTaca                                                                                                                                                                             <  2:644333/231‑1 (MQ=255)                                                              aGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCGCGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGCGGCAAAATAATGCGTTTTGTTGATGAATATCGCGCCCCGGAACAGGGGATGAAGTTAATTGGGACTCTGCGCAAACGGGCTTcacaaacacattaa                                                                                                                                                                              >  2:348370/1‑228 (MQ=255)                                                                                    aCTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGTACAGGTGATGCAGTTAATTGAGCATCTCGGCGAACGGGCTTCAAAACCCTTTTAAACCGCCGCACAcccccccgggat                                                                                                                                                       >  2:907970/1‑230 (MQ=255)                                                                                    aCTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCCCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTCCGCGAACGTGCTTCACTTCTCTCTTCCACCGCCGACCGCCCTCTGCggtt                                                                                                                                                       >  1:440599/1‑237 (MQ=255)                                                                                        gtaccggTTGGTTTTGCCATGGGAGTAATTAATGAAGCCGAAGACGGGGACCCTCTTGACGCGTTACAAAACATGTTTGACGTTGGGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATg                                                                                                                                                   <  2:846839/233‑1 (MQ=255)                                                                                           cacGTTGGCTTTGCCATGGGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGaa                                                                                                                                                <  1:906786/239‑1 (MQ=255)                                                                                             cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGGGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                                                                             >  2:585010/1‑224 (MQ=255)                                                                                             cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                                                                             <  1:585010/224‑1 (MQ=255)                                                                                             cGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCACTCTTACACCTCCGAACGCCCTCTGCGGGTATTGGAAgt                                                                                                                                              >  1:278799/1‑239 (MQ=255)                                                                                                tGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGGGCTTCACATCTCTCTTACCCCCCCGAACCCCCCCTGCGGTTTAAGGaaagggg                                                                                                                                           >  2:789952/1‑234 (MQ=255)                                                                                                    tttGCCAGGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTgg                                                                                                                                        <  1:736026/238‑1 (MQ=255)                                                                                                      tGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGAGCATTTGCCCGAACGGGCTTCCCATCCCTCTTAAACCGCCAGACGCCCCCTCGGGATTTTGGAAGGGGGTGgggg                                                                                                                                     >  2:804054/1‑239 (MQ=255)                                                                                                             aGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTAGGGAAGTGTGGGGCGGTccaac                                                                                                                               >  2:869698/1‑234 (MQ=255)                                                                                                                  aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt                                                                                                                                                                                                                            >  1:98095/1‑140 (MQ=255)                                                                                                                  aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt                                                                                                                                                                                                                            <  2:98095/140‑1 (MQ=255)                                                                                                                  aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACg                                                                                                                          <  1:804054/238‑1 (MQ=255)                                                                                                                  aattaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGGGATGCAGTTAATTGAGCATCTGCGGGAACGGGCTTCCCATCCCTCTTACACCGCCCACAGCCCTCGGCGGCGTTTGGAAGGGGGGGGCGGTCAATCCCAccg                                                                                                                         >  2:889996/1‑237 (MQ=255)                                                                                                                   attaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCt                                                                                                                        <  1:863297/239‑1 (MQ=255)                                                                                                                    ttaatGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTAAACTGCCGAACGCCCTCTGCGGGTTATGGAAGTGTGTGGCGGTCATACCCCCGCtt                                                                                                                       >  1:539675/1‑238 (MQ=255)                                                                                                                            gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGTGGATGAAGTTAATTGCGCCTCTCCGCGAACGTGCTTCACATCTCTCTTACCCCGCCGAACGCCCTCTGCGGATTATGGAAGAGGTTGGCGGTACCACCAACCCCATCTTTaaa                                                                                                               >  2:434442/1‑239 (MQ=255)                                                                                                                                    aCGGGACACTCTCGACGCATTACAAAACCTTTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGTAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCGCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCt                                                                                                       <  2:539675/239‑1 (MQ=255)                                                                                                                                                       ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACAGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCACACCCCCCCGCTCTTTAAATTCTGCCCCACCCAGTTCATCCCGGaa                                                                                    >  2:175560/1‑239 (MQ=255)                                                                                                                                                               tgtttttGAGTTTGTGCGGGGTGTGGGGGCGCTGTTGGAGGGGGAGGAAAAATAATGGGTGTGGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTCTGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGt                                                                               <  2:364754/232‑1 (MQ=255)                                                                                                                                                                aTGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGGATGGAGAAGAAAAATAAGGCGTTTTGTTGATGAATATCGCGGGCCGGAACAGGTGAGTCAGTTAATGGAGCATCTGCGCTAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAg                                                                           <  1:181973/239‑1 (MQ=255)                                                                                                                                                                  gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa                                                                                                                                                                                                                                     <  1:414835/83‑1 (MQ=255)                                                                                                                                                                  gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa                                                                                                                                                                                                                                     >  2:414835/1‑83 (MQ=255)                                                                                                                                                                  gTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCCCCGAACGCCCTCTGCGGATTATGGAAGTGTGGGGCGGCCATACCCCCGCCATCTTTAAATTCAGCGCCGACCAGGTAAGTCCGGAAAAAGGTGAGtt                                                                         >  2:204517/1‑239 (MQ=255)                                                                                                                                                                    ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGtttt                                                                       >  1:754215/1‑238 (MQ=255)                                                                                                                                                                        cGTTGAGCCGGATGGCGGCGGGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATcc                                                                    <  1:789952/238‑1 (MQ=255)                                                                                                                                                                         gtggAGCCGGATGTCGGCGCGCTGTTGGATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCa                                                                   <  1:622347/235‑1 (MQ=255)                                                                                                                                                                         gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGGGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCa                                                                   <  1:907970/238‑1 (MQ=255)                                                                                                                                                                         gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTTTGGAAGGGTGTGGCGGGCTCACCCCCGCTATCTTCTAATTCGGCCCCGCCCAGTTAATGCCGGAAAACGATGAGtttcatcct                                                                  >  1:364754/1‑233 (MQ=255)                                                                                                                                                                                       gggCGCGCTTTTTTAAGGGGAGGAAAAATAAGGGGTTTTGTTTATGAATTACGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGGGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGccc                                                    <  2:487770/238‑1 (MQ=255)                                                                                                                                                                                            cgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcttcgagagtgtcgcgtgcttcggcttcattaattccgctcatggcaaagccaacgtgtaccagt                                                                                                                                    <  2:895012‑M2/154‑108 (MQ=255)                                                                                                                                                                                            cgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcgtcgagagtgtcgcgtgcttcggcttcattaattacgctcatggcaaagccaacgtgtaccagt                                                                                                                                    >  1:895012‑M2/1‑47 (MQ=255)                                                                                                                                                                                               tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCt                                                                                                                        <  1:196647/163‑1 (MQ=255)                                                                                                                                                                                                       ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCg                                    <  1:869698/239‑1 (MQ=255)                                                                                                                                                                                                       ggCGAGGAAAAATAATGCGTTTTGTTGATGAATAGCGCGCGCCGGAACAGGTGATGCAGTTAATTGGGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCg                                    <  1:434442/239‑1 (MQ=255)                                                                                                                                                                                                         cGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcgtcgagagtgtcgcgtgcttcggcttcattaattacgctcatggcaaagccaacgtgtaccagtacccactggcccacccgcggctgaccgttttcatcgcagctgccgatcaacgttaaatcgacctcgcccggaattccgcacacgtccactttcgcctg                                  <  2:634375‑M2/239‑206 (MQ=255)                                                                                                                                                                                                           aGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGcc                                                                                                                                                                 >  2:339357/1‑110 (MQ=255)                                                                                                                                                                                                           aGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGcc                                                                                                                                                                 <  1:339357/110‑1 (MQ=255)                                                                                                                                                                                                           aGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATgg                                >  1:703337/1‑239 (MQ=255)                                                                                                                                                                                                           aGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACACACGCCCTCTTTAAATTTGGCCTCGGCCAGTTACTGGCGGGAAACGTTTGGTTTATTCCCCGTCCGGGGTGCCCGGGCGGCGGACTGCCgcggg                                >  2:29712/1‑235 (MQ=255)                                                                                                                                                                                                               aaaaTAATGCGTTTGGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATGGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTa                             <  1:348370/238‑1 (MQ=255)                                                                                                                                                                                                                     atGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTAGAATCGa                      <  1:204517/239‑1 (MQ=255)                                                                                                                                                                                                                        cGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATCGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTAGAATCGaca                    <  1:889996/238‑1 (MQ=255)                                                                                                                                                                                                                         gTTTTGGTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTAGAATCGacac                   <  1:175560/238‑1 (MQ=255)                                                                                                                                                                                                                                  atgaATTTCGCGGGCCGGAACAGGGGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCgg                                                           <  1:135139/189‑1 (MQ=255)                                                                                                                                                                                                                                    gaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                                                                             >  1:772238/1‑89 (MQ=255)                                                                                                                                                                                                                                    gaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCctct                                                                                                                                                             <  2:772238/89‑1 (MQ=255)                                                                                                                                                                                                                                         ccgcgccccgacctccggctcaacgccaaacatgttgtggaatggtgcgatggttgctcgtgcctcggcctcattaatttcgctcatggcaaagccaacgtgtaccagtaccccctggcccacgcgcggctggccgttttcatcgccgctgccgactaacgttaaatcgacatcgcgctgaatgccgcagacgtcgactttcgcctggttgccgtcaatggtgcggatctggccgggaa  >  2:732467‑M2/2‑2 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              GTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAAACGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGAACGCCCTCTGCGGATTATGGAAGTGTGTGGCGGTCATACCCACGCTATCTTTAAATTCGGCCTCGACCAGTTACTGCCGGAAAACGTTGAGTTTATCCACGGTCCGGGGTGCCCGGTGTGCGTACTGCCGATGGGTAGAATCGACACCTGCGTGGAGATTGCCA  >  NC_000913/2851924‑2852394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.