mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4612024 | 122 (1.080) | 3 (0.030) | 3/416 | NT | 2.5% | intergenic (+23/‑104) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein |
| ? | NC_000913 | = 4612030 | 118 (1.080) | intergenic (+29/‑98) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein | |||||
| * | ? | NC_000913 | = 4345636 | 89 (0.790) | 4 (0.040) | 4/420 | NT | 4.4% | intergenic (‑78/+44) | yjdF/fumB | DUF2238 family inner membrane protein/anaerobic class I fumarate hydratase (fumarase B) |
| ? | NC_000913 | = 4345643 | 88 (0.800) | intergenic (‑85/+37) | yjdF/fumB | DUF2238 family inner membrane protein/anaerobic class I fumarate hydratase (fumarase B) | |||||
| * | ? | NC_000913 | 4267880 = | 163 (1.440) | 3 (0.030) | 3/418 | NT | 1.9% | coding (767/1194 nt) | tyrB | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| ? | NC_000913 | 4267979 = | 157 (1.430) | coding (866/1194 nt) | tyrB | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent | |||||
| * | ? | NC_000913 | = 4162515 | 89 (0.790) | 4 (0.040) | 4/420 | NT | 4.1% | coding (756/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162526 | 99 (0.900) | coding (745/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | = 4054137 | 113 (1.000) | 4 (0.040) | 4/414 | NT | 3.5% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | NC_000913 | = 4054157 | 112 (1.030) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | NC_000913 | = 3535515 | 137 (1.210) | 3 (0.030) | 3/412 | NT | 2.3% | coding (354/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | = 3535633 | 122 (1.130) | coding (236/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | 3018350 = | 143 (1.260) | 3 (0.030) | 3/414 | NT | 2.1% | coding (2291/3099 nt) | ygfK | putative Fe‑S subunit oxidoreductase subunit |
| ? | NC_000913 | = 3018346 | 141 (1.300) | coding (2287/3099 nt) | ygfK | putative Fe‑S subunit oxidoreductase subunit | |||||
| * | ? | NC_000913 | = 2818275 | 105 (0.930) | 3 (0.040) | 3/274 | NT | 4.7% | intergenic (‑1/+198) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818551 = | 56 (0.780) | intergenic (‑2/+2) | argV/serV | tRNA‑Arg/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 2713829 | 136 (1.200) | 3 (0.030) | 3/410 | NT | 2.3% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 125 (1.160) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2319247 | 92 (0.810) | 3 (0.030) | 3/416 | NT | 3.3% | coding (630/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | NC_000913 | = 2319264 | 89 (0.820) | coding (613/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||