mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4231910 = | 86 (1.140) | 4 (0.050) | 4/488 | NT | 4.6% | coding (1324/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 |
| ? | NC_000913 | 4232299 = | 81 (1.110) | coding (935/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 | |||||
| * | ? | NC_000913 | = 3972570 | 63 (0.840) | 3 (0.040) | 3/484 | NT | 4.9% | coding (49/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase |
| ? | NC_000913 | = 3972983 | 56 (0.770) | coding (462/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase | |||||
| * | ? | NC_000913 | 3680196 = | 97 (1.290) | 3 (0.040) | 3/492 | NT | 3.2% | coding (778/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| ? | NC_000913 | 3680519 = | 84 (1.140) | coding (1422/1497 nt) | yhjJ | putative periplasmic M16 family chaperone | |||||
| * | ? | NC_000913 | = 3560428 | 93 (1.230) | 4 (0.050) | 4/486 | NT | 4.3% | pseudogene (26/606 nt) | glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| ? | NC_000913 | = 3560565 | 86 (1.180) | pseudogene (41/150 nt) | glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon | |||||
| * | ? | NC_000913 | 3276530 = | 65 (0.860) | 3 (0.040) | 3/486 | NT | 3.5% | coding (1249/1572 nt) | garD | D‑galactarate dehydrogenase |
| ? | NC_000913 | 3277296 = | 101 (1.380) | coding (295/336 nt) | prlF | antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system | |||||
| * | ? | NC_000913 | 2477002 = | 71 (0.940) | 3 (0.040) | 3/478 | NT | 4.4% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913 | 2477035 = | 64 (0.890) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||