mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 32.5% | 43.3 / 24.4 | 43 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2765420 = | 44 (0.470) | 3 (0.040) | 3/432 | 8.8 | 7.9% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 33 (0.420) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1395088 | 96 (1.020) | 4 (0.040) | 4/506 | 9.1 | 4.1% | coding (835/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance |
| ? | NC_000913 | = 1395094 | 93 (1.010) | coding (829/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance | |||||
| * | ? | NC_000913 | = 3914609 | 94 (1.020) | 4 (0.040) +GTA |
3/502 | 9.7 | 4.0% | coding (592/1371 nt) | glmU | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| ? | NC_000913 | 3914610 = | 96 (1.020) | coding (591/1371 nt) | glmU | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase | |||||
| * | ? | NC_000913 | = 1035098 | 86 (0.910) | 3 (0.030) | 3/504 | 9.7 | 3.0% | coding (33/708 nt) | hyaC | hydrogenase 1, b‑type cytochrome subunit |
| ? | NC_000913 | 3159396 = | 109 (1.190) | coding (1751/2220 nt) | ygiQ | Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | = 4326660 | 98 (1.040) | 3 (0.030) | 3/508 | 9.8 | 3.3% | coding (75/336 nt) | yjdM | zinc‑ribbon family protein |
| ? | NC_000913 | = 4327579 | 78 (0.850) | coding (445/2229 nt) | crfC | clamp‑binding sister replication fork colocalization protein, dynamin‑related | |||||
| * | ? | NC_000913 | = 4110545 | 57 (0.600) | 3 (0.030) | 3/506 | 9.8 | 5.1% | coding (616/756 nt) | cdh | CDP‑diacylglycerol phosphotidylhydrolase |
| ? | NC_000913 | 4167806 = | NA (NA) | noncoding (1148/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 3973849 = | 73 (0.770) | 3 (0.030) | 3/512 | 9.8 | 4.0% | coding (242/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase |
| ? | NC_000913 | 3973867 = | 72 (0.780) | coding (260/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase | |||||
| * | ? | NC_000913 | 3893264 = | 103 (1.090) | 3 (0.030) | 3/512 | 9.8 | 2.6% | coding (500/960 nt) | yidZ | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 4488197 | 123 (1.330) | coding (880/1083 nt) | lptG | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | 3740161 = | 123 (1.310) | 3 (0.030) | 3/506 | 9.8 | 2.5% | coding (457/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | 3740324 = | 112 (1.220) | coding (620/1254 nt) | avtA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||
| * | ? | NC_000913 | = 3391362 | 115 (1.220) | 3 (0.030) | 3/506 | 9.8 | 2.7% | coding (667/1446 nt) | tldD | putative peptidase |
| ? | NC_000913 | 3391501 = | 102 (1.110) | coding (528/1446 nt) | tldD | putative peptidase | |||||