breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,2680TC32.5% 43.3 / 24.4 43intergenic (+474/+168)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 12 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2765420 =44 (0.470)3 (0.040) 3/432 8.8 7.9% intergenic (‑267/+93) yfjL/yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein
?NC_000913 = 2765411 33 (0.420)intergenic (‑258/+102) yfjL/yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein
* ? NC_000913 = 139508896 (1.020)4 (0.040) 4/506 9.1 4.1% coding (835/1032 nt) ynaI mechanosensitive channel protein, very small conductance
?NC_000913 = 1395094 93 (1.010)coding (829/1032 nt) ynaI mechanosensitive channel protein, very small conductance
* ? NC_000913 = 391460994 (1.020)4 (0.040)
+GTA
3/502 9.7 4.0% coding (592/1371 nt) glmU fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
?NC_000913 3914610 = 96 (1.020)coding (591/1371 nt) glmU fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
* ? NC_000913 = 103509886 (0.910)3 (0.030) 3/504 9.7 3.0% coding (33/708 nt) hyaC hydrogenase 1, b‑type cytochrome subunit
?NC_000913 3159396 = 109 (1.190)coding (1751/2220 nt) ygiQ Radical SAM superfamily protein
* ? NC_000913 = 432666098 (1.040)3 (0.030) 3/508 9.8 3.3% coding (75/336 nt) yjdM zinc‑ribbon family protein
?NC_000913 = 4327579 78 (0.850)coding (445/2229 nt) crfC clamp‑binding sister replication fork colocalization protein, dynamin‑related
* ? NC_000913 = 411054557 (0.600)3 (0.030) 3/506 9.8 5.1% coding (616/756 nt) cdh CDP‑diacylglycerol phosphotidylhydrolase
?NC_000913 4167806 = NA (NA)noncoding (1148/1542 nt) rrsB 16S ribosomal RNA of rrnB operon
* ? NC_000913 3973849 =73 (0.770)3 (0.030) 3/512 9.8 4.0% coding (242/882 nt) rffH glucose‑1‑phosphate thymidylyltransferase
?NC_000913 3973867 = 72 (0.780)coding (260/882 nt) rffH glucose‑1‑phosphate thymidylyltransferase
* ? NC_000913 3893264 =103 (1.090)3 (0.030) 3/512 9.8 2.6% coding (500/960 nt) yidZ putative DNA‑binding transcriptional regulator
?NC_000913 = 4488197 123 (1.330)coding (880/1083 nt) lptG lipopolysaccharide export ABC permease
* ? NC_000913 3740161 =123 (1.310)3 (0.030) 3/506 9.8 2.5% coding (457/1254 nt) avtA valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
?NC_000913 3740324 = 112 (1.220)coding (620/1254 nt) avtA valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
* ? NC_000913 = 3391362115 (1.220)3 (0.030) 3/506 9.8 2.7% coding (667/1446 nt) tldD putative peptidase
?NC_000913 3391501 = 102 (1.110)coding (528/1446 nt) tldD putative peptidase