mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 749,516 | C→T | G137S (GGT→AGT) | gltA ← | citrate synthase |
| JC JC | 919,497 | IS1 (–) +9 bp | coding (778‑786/2277 nt) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 1,613,342 | T→C | intergenic (‑177/‑35) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
| MC JC | 3,169,712 | (GCA)4→3 | coding (479‑481/828 nt) | cpdA ← | 3',5' cAMP phosphodiesterase |
| RA | 4,029,087 | A→T | noncoding (197/1542 nt) | rrsA → | 16S ribosomal RNA of rrnA operon |
| RA | 4,624,518 | G→A | Q204* (CAG→TAG) | rob ← | right oriC‑binding transcriptional activator, AraC family |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 37 (0.890) | 67 (1.610) | 40/396 | 0.1 | 59.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | 54 (1.300) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1203246 = | 34 (0.820) | 8 (0.210) | 8/364 | 2.7 | 20.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 31 (0.810) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 34 (0.820) | 8 (0.210) | 8/364 | 2.7 | 20.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 31 (0.810) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||