mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,533 | 0 | T | C | 33.3% | 53.2 / 13.6 | 38 | pseudogene (885/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| * | CP009273 | 1,460,458 | 0 | T | C | 25.0% | 77.2 / 22.4 | 44 | pseudogene (810/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| * | CP009273 | 1,460,527 | 0 | C | T | 22.5% | 80.3 / 11.0 | 40 | pseudogene (879/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 59 (1.420) | 4 (0.100) | 4/378 | 4.2 | 7.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 48 (1.210) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 54 (1.300) | 5 (0.130) | 4/378 | 4.2 | 9.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 48 (1.210) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3942724 | 46 (1.110) | 4 (0.100) | 4/384 | 4.2 | 9.7% | coding (606/1521 nt) | yifB | bifunctional magnesium chelatase family protein and putative transcriptional regulator |
| ? | CP009273 | = 3942954 | 30 (0.740) | coding (376/1521 nt) | yifB | bifunctional magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | CP009273 | = 4204724 | 39 (0.940) | 3 (0.080) | 3/374 | 4.6 | 6.7% | coding (517/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | CP009273 | = 4204915 | 47 (1.200) | coding (708/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | CP009273 | = 2598348 | 32 (0.770) | 3 (0.080) | 3/378 | 4.6 | 9.0% | coding (179/1440 nt) | hyfD | hydrogenase 4, membrane subunit |
| ? | CP009273 | = 2598352 | 30 (0.760) | coding (183/1440 nt) | hyfD | hydrogenase 4, membrane subunit | |||||
| * | ? | CP009273 | = 603466 | 47 (1.130) | 4 (0.100) | 3/372 | 4.6 | 8.2% | intergenic (+22/‑55) | hokE/insL1 | toxic polypeptide, small/IS186 transposase |
| ? | CP009273 | 604816 = | 45 (1.150) | intergenic (+183/+99) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | CP009273 | = 196899 | 49 (1.180) | 3 (0.070) | 3/382 | 4.7 | 5.9% | intergenic (+52/‑70) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone |
| ? | CP009273 | = 196906 | 48 (1.200) | intergenic (+59/‑63) | bamA/skp | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor/periplasmic chaperone | |||||