New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP025533 | 2110023 = | NA (NA) | 154 (0.990) | 132/496 | 0.1 | 99.4% | intergenic (+2/+13) | CYL77_10050/CYL77_10055 | ABC transporter ATP‑binding protein/ISL3 family transposase |
? | CP025533 | = 2702561 | 1 (0.010) | pseudogene (453/474 nt) | CYL77_12850 | IS630 family transposase |
CTGGTTTAACGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAAATGCTCCAACCGTCCGTTGATCGCTTCGACCGGACCGTTGGAGACACCAACATCGAAATACGCCAACACATCACCAAGTCGTTTAAACAAACTACGACCCAACTGCGCGAGTTCCTTATTCGGCCCC > CP025533/2110013‑2110261 | aggcttaaccGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAAATGCTCCAACCGTCCGTTGATCGCTTCGACCGGACCGTTGGAGACACCAACATCGAAATACGCCAACACATCACCAAGTCGTTTAAACAAACTACGACCCAACTGCGCGAGTTCCTTATTCGGcccc < 2:717229/240‑1 (MQ=1) | CTGGTTTAACGGCTCTTCCTGTTTTAGAGTGCATTGATCTTATGGACCAACTGCCCTGAATGGATAAGGCACCGCAGAATGTAGTGGTTCAAATTACGGAAACCTAGAGCAATCCCACGCAAATGCTCCAACCGTCCGTTGATCGCTTCGACCGGACCGTTGGAGACACCAACATCGAAATACGCCAACACATCACCAAGTCGTTTAAACAAACTACGACCCAACTGCGCGAGTTCCTTATTCGGCCCC > CP025533/2110013‑2110261 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |