mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 218,417 | 0 | C | G | 35.7% | 11.1 / 12.6 | 14 | A297A (GCG→GCC) | h16_A0205 | transcriptional regulator, LysR‑family |
| * | AM260479 | 3,814,017 | 0 | A | T | 33.3% | 18.6 / 14.8 | 18 | Q282L (CAG→CTG) | gspD | general secretion pathway protein D |
| Marginal new junction evidence (lowest skew 10 of 203 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 298812 | 30 (1.220) | 6 (0.260) | 6/202 | 1.3 | 17.9% | coding (557/669 nt) | crp1 | transcriptional regulator, CRP‑family |
| ? | AM260479 | = 298819 | 27 (1.180) | coding (550/669 nt) | crp1 | transcriptional regulator, CRP‑family | |||||
| * | ? | AM260479 | 1686167 = | 26 (1.060) | 4 (0.210) | 4/168 | 1.5 | 18.1% | intergenic (+14/+28) | h16_A1551/h16_A1552 | outer membrane protein (porin)/predicted phosphatase homolog to the C‑terminal domain of histone macroH2A1 |
| ? | AM260479 | 1686191 = | 16 (0.840) | intergenic (+38/+4) | h16_A1551/h16_A1552 | outer membrane protein (porin)/predicted phosphatase homolog to the C‑terminal domain of histone macroH2A1 | |||||
| * | ? | AM260479 | 610436 = | 40 (1.630) | 4 (0.190) | 4/184 | 1.6 | 10.2% | coding (530/906 nt) | h16_A0580 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 610452 = | 36 (1.720) | coding (546/906 nt) | h16_A0580 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260480 | 2420499 = | 36 (1.070) | 7 (0.220) | 7/200 | 1.7 | 18.1% | coding (400/1155 nt) | h16_B2140 | ABC‑type transporter, permease component |
| ? | AM260480 | 2420526 = | 30 (0.960) | coding (427/1155 nt) | h16_B2140 | ABC‑type transporter, permease component | |||||
| * | ? | AM260479 | 3694866 = | 26 (1.060) | 4 (0.180) | 4/200 | 1.7 | 14.8% | coding (166/249 nt) | bolA | predicted transcriptional regulator, BolA superfamily |
| ? | AM260479 | 3694889 = | 22 (0.970) | coding (143/249 nt) | bolA | predicted transcriptional regulator, BolA superfamily | |||||
| * | ? | AM260479 | 3366373 = | 30 (1.220) | 4 (0.180) | 4/200 | 1.7 | 12.3% | coding (1314/2190 nt) | cG | ATP‑dependent DNA helicase |
| ? | AM260479 | 3366394 = | 29 (1.280) | coding (1293/2190 nt) | cG | ATP‑dependent DNA helicase | |||||
| * | ? | AM260479 | 3185292 = | 35 (1.430) | 4 (0.180) | 4/198 | 1.7 | 10.5% | coding (1260/3327 nt) | h16_A2946 | Acetyl‑CoA carboxylase (Biotin carboxylase and carboxyl transferase domains) |
| ? | AM260479 | 3185363 = | 36 (1.600) | coding (1331/3327 nt) | h16_A2946 | Acetyl‑CoA carboxylase (Biotin carboxylase and carboxyl transferase domains) | |||||
| * | ? | AM260479 | 3034307 = | 20 (0.820) | 4 (0.180) | 4/200 | 1.7 | 18.0% | intergenic (+541/+378) | h16_A2804/h16_A2806 | conserved hypothetical protein/peptide methionine sulfoxide reductase |
| ? | AM260479 | 3034325 = | 18 (0.790) | intergenic (+559/+360) | h16_A2804/h16_A2806 | conserved hypothetical protein/peptide methionine sulfoxide reductase | |||||
| * | ? | AM260479 | 2246648 = | 27 (1.100) | 4 (0.180) | 4/198 | 1.7 | 15.5% | coding (891/969 nt) | h16_A2064 | conserved hypothetical transmembrane protein |
| ? | AM260479 | 2246678 = | 19 (0.850) | coding (861/969 nt) | h16_A2064 | conserved hypothetical transmembrane protein | |||||
| * | ? | AM260479 | 2064347 = | 28 (1.140) | 4 (0.180) | 4/198 | 1.7 | 14.1% | coding (698/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 2064366 = | 23 (1.020) | coding (717/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family | |||||