mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| MC JC | AM260479 | 335,538 | Δ778 bp | [nagA]–[nagB] | [nagA], [nagB] | |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| JC JC | AM260479 | 3,390,388 | Δ2 bp :: ISAE1 (+) +8 bp :: +CC | coding (488‑495/1047 nt) | h16_A3132 → | response regulator containing an atypical phosphorylation pocket |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| JC | AM260479 | 3,403,046 | (AGGTCTCGCAGGCCAT)1→2 | coding (772/996 nt) | phcA ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260479 | 4,016,601 | Δ1 bp | coding (203/969 nt) | h16_A3718 → | probable extra‑cytoplasmic solute receptor,putative component of transport system, tripartite tricarboxylate transport (TTT) family |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,518,085 | C→T | A85T (GCC→ACC) | h16_B1356 ← | conserved hypothetical membrane spanning protein |
| RA | AM260480 | 1,537,213 | G→A | G347D (GGC→GAC) | h16_B1373 → | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| RA | AM260480 | 1,540,787 | T→C | K465R (AAG→AGG) | coxL6 ← | Aerobic‑type carbon monoxide dehydrogenase homolog, large subunit |
| RA | AM260480 | 1,636,494 | +T | intergenic (‑100/‑189) | h16_B1459 ← / → h16_B1460 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains/MFS transporter, OFA family |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,063,918 | G→A | P215L (CCG→CTG) | h16_B1826 ← | Acyl‑CoA dehydrogenase |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,256,779 | G→A | P94S (CCG→TCG) | h16_B1998 ← | transcriptional regulator, XRE‑family |
| RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 55293 | 55332 | 40 | 2 [0] | [1] 2 | h16_A0040 | predicted membrane protein |
| * | * | ÷ | AM260479 | 89738 | 89853 | 116 | 3 [0] | [0] 2 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 156396 | 156435 | 40 | 2 [1] | [1] 3 | [h16_A0142] | [h16_A0142] |
| * | * | ÷ | AM260479 | 159872 | 159911 | 40 | 4 [1] | [0] 2 | h16_A0146 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 254004 | 254029 | 26 | 6 [1] | [0] 2 | h16_A0240 | Acetyltransferase (GNAT) family |
| * | * | ÷ | AM260479 | 254340 | 254424 | 85 | 2 [0] | [1] 3 | h16_A0241 | Uncharacterized protein, possibly involved in aromatic compounds catabolism |
| * | * | ÷ | AM260479 | 370831 | 370846 | 16 | 2 [1] | [0] 2 | sco2 | cytochrome oxidase assembly protein, Sco1/SenC family |
| * | * | ÷ | AM260479 | 378865 | 378896 | 32 | 2 [1] | [0] 2 | h16_A0360/h16_A0361 | response regulator with putative antiterminator output/putative fumarylacetoacetat hydroxylase |
| * | * | ÷ | AM260479 | 381435 | 381644 | 210 | 3 [1] | [1] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 401583 | 401596 | 14 | 3 [1] | [0] 2 | h16_A0382 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 442895 | 443007 | 113 | 2 [0] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 570431 | 570464 | 34 | 2 [0] | [0] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
| * | * | ÷ | AM260479 | 602890 | 602934 | 45 | 3 [1] | [0] 2 | sua | putative translation factor (SUA5) |
| * | * | ÷ | AM260479 | 718134 | 718169 | 36 | 2 [1] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 791399 | 791533 | 135 | 2 [1] | [0] 2 | h16_A0732 | Beta‑propeller domains of methanol dehydrogenase‑type (homolog) |
| * | * | ÷ | AM260479 | 805371 | 805438 | 68 | 2 [1] | [1] 2 | h16_A0741 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 922776 | 922805 | 30 | 2 [0] | [0] 2 | paaJ | 3‑Ketoacyl‑CoA‑thiolase P‑44/SCP2 |
| * | * | ÷ | AM260479 | 1004357 | 1004404 | 48 | 2 [1] | [0] 2 | h16_A0912 | uncharacterized conserved protein |
| * | * | ÷ | AM260479 | 1017304 | 1017333 | 30 | 2 [0] | [0] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1109831 | 1109873 | 43 | 2 [0] | [1] 2 | add | adenosine deaminase |
| * | * | ÷ | AM260479 | 1129294 | 1129347 | 54 | 2 [1] | [0] 2 | h16_A1031 | membrane spanning protein, RDD family |
| * | * | ÷ | AM260479 | 1206100 | 1206150 | 51 | 3 [1] | [0] 2 | h16_A1108 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1228097 | 1228119 | 23 | 2 [0] | [0] 2 | [h16_A1126] | [h16_A1126] |
| * | * | ÷ | AM260479 | 1380856 | 1380905 | 50 | 2 [1] | [1] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1381266 | 1381271 | 6 | 2 [0] | [0] 4 | h16_A1272/h16_A1273 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1402331 | 1402368 | 38 | 2 [1] | [1] 3 | h16_A1291/h16_A1292 | Isovaleryl‑CoA dehydrogenase/ATP‑dependent transcriptional regulator,MalT‑family |
| * | * | ÷ | AM260479 | 1405217 | 1405237 | 21 | 3 [1] | [1] 4 | [h16_A1292] | [h16_A1292] |
| * | * | ÷ | AM260479 | 1464461 | 1464477 | 17 | 2 [0] | [0] 21 | h16_A1354 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1603747 | 1603767 | 21 | 2 [0] | [0] 2 | [tRNA‑Leu (TAG)] | [tRNA‑Leu (TAG)] |
| * | * | ÷ | AM260479 | 1786782 | 1786820 | 39 | 3 [1] | [1] 3 | cyoA2 | bo3‑type quinol oxidase, subunit II |
| * | * | ÷ | AM260479 | 1953144 | 1953160 | 17 | 4 [1] | [0] 3 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
| * | * | ÷ | AM260479 | 2081638 | 2081661 | 24 | 2 [1] | [0] 2 | h16_A1915 | Predicted Fe‑S protein |
| * | * | ÷ | AM260479 | 2154170 | 2154190 | 21 | 7 [1] | [0] 2 | h16_A1978/h16_A1979 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260479 | 2253280 | 2253317 | 38 | 2 [0] | [0] 2 | h16_A2072 | predicted permease |
| * | * | ÷ | AM260479 | 2426137 | 2426147 | 11 | 2 [0] | [0] 2 | [lytT] | [lytT] |
| * | * | ÷ | AM260479 | 2449848 | 2449888 | 41 | 2 [1] | [1] 2 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463509 | 2463543 | 35 | 2 [1] | [0] 2 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2546092 | 2546122 | 31 | 2 [0] | [0] 2 | argAB | acetylglutamate kinase and acetyltransferase |
| * | * | ÷ | AM260479 | 2723570 | 2723578 | 9 | 2 [0] | [1] 3 | h16_A2508 | Glycerol‑3‑phosphate dehydrogenase |
| * | * | ÷ | AM260479 | 2756784 | 2756788 | 5 | 3 [1] | [0] 2 | h16_A2548 | Uncharacterized protein conserved in bacteria |
| * | * | ÷ | AM260479 | 2816235 | 2816307 | 73 | 2 [1] | [1] 2 | h16_A2609 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 2907651 | 2907654 | 4 | 2 [0] | [0] 2 | h16_A2693 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3024001 | 3024010 | 10 | 2 [0] | [1] 2 | h16_A2796 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3058225 | 3058296 | 72 | 2 [1] | [0] 2 | h16_A2830 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 3207510 | 3207549 | 40 | 2 [1] | [0] 2 | cobU | Adenosylcobinamide‑phosphate guanylyltransferase(CobU) |
| * | * | ÷ | AM260479 | 3243968 | 3244012 | 45 | 6 [1] | [1] 2 | [cysH]–[h16_A2998] | [cysH],[h16_A2998] |
| * | * | ÷ | AM260479 | 3322013 | 3322045 | 33 | 2 [0] | [1] 2 | mutL | DNA mismatch repair protein MutL |
| * | * | ÷ | AM260479 | 3341380 | 3341454 | 75 | 2 [0] | [0] 2 | [h16_A3087] | [h16_A3087] |
| * | * | ÷ | AM260479 | 3352212 | 3352272 | 61 | 3 [1] | [0] 2 | glcE | 2‑Hydroxy‑acid oxidase, FAD‑binding subunit |
| * | * | ÷ | AM260479 | 3360878 | 3360919 | 42 | 3 [1] | [1] 3 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3401493 | 3401555 | 63 | 3 [1] | [0] 3 | h16_A3142 | Lipoprotein |
| * | * | ÷ | AM260479 | 3422965 | 3422985 | 21 | 2 [1] | [1] 3 | h16_A3163 | transcriptional regulator, Exoribonuclease II‑family |
| * | * | ÷ | AM260479 | 3452011 | 3452057 | 47 | 3 [1] | [0] 2 | [h16_A3193] | [h16_A3193] |
| * | * | ÷ | AM260479 | 3462442 | 3462462 | 21 | 2 [0] | [0] 2 | h16_A3204 | transcriptional regulator, LysR‑family |
| * | * | ÷ | AM260479 | 3462505 | 3462542 | 38 | 2 [0] | [0] 2 | [h16_A3204] | [h16_A3204] |
| * | * | ÷ | AM260479 | 3482474 | 3482511 | 38 | 3 [0] | [0] 2 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548140 | 3548201 | 62 | 2 [0] | [0] 2 | ftsI1 | peptidoglycan glycosyltransferase |
| * | * | ÷ | AM260479 | 3614569 | 3614577 | 9 | 2 [0] | [1] 3 | hemA/prfA | Glutamyl‑tRNA reductase/protein chain release factor A (RF‑1) |
| * | * | ÷ | AM260479 | 3671707 | 3671749 | 43 | 2 [1] | [0] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3722937 | 3722979 | 43 | 2 [0] | [1] 2 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
| * | * | ÷ | AM260479 | 3829854 | 3829912 | 59 | 2 [1] | [1] 3 | [h16_A3555] | [h16_A3555] |
| * | * | ÷ | AM260479 | 3857073 | 3857130 | 58 | 2 [1] | [0] 2 | [h16_A3590] | [h16_A3590] |
| * | * | ÷ | AM260479 | 3871562 | 3871594 | 33 | 2 [0] | [0] 2 | pyk2/h16_A3603 | pyruvate kinase/putative neutral zinc metallopeptidase |
| * | * | ÷ | AM260479 | 3910001 | 3910043 | 43 | 2 [1] | [0] 3 | priA | Primosomal protein N' |
| * | * | ÷ | AM260479 | 3979070 | 3979121 | 52 | 2 [1] | [1] 3 | lamB | Maltoporin‑like channel (LamB porin) |
| * | * | ÷ | AM260480 | 174655–175127 | 179995–175130 | 4–5341 | 5 [3] | [2] 5 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193562 | 193619 | 58 | 4 [2] | [3] 4 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 287738 | 287755 | 18 | 4 [2] | [3] 5 | h16_B0251/flhB1 | Lipoprotein/flagellar biosynthesis protein |
| * | * | ÷ | AM260480 | 334538 | 334581 | 44 | 6 [3] | [1] 4 | h16_B0298/h16_B0299 | transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase |
| * | * | ÷ | AM260480 | 571270 | 571296 | 27 | 4 [2] | [2] 4 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 633601 | 633665 | 65 | 5 [3] | [2] 5 | [fliQ] | [fliQ] |
| * | * | ÷ | AM260480 | 752008 | 752045 | 38 | 4 [2] | [3] 5 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 757331 | 757351 | 21 | 4 [2] | [2] 5 | [h16_B0678] | [h16_B0678] |
| * | * | ÷ | AM260480 | 860306 | 860356 | 51 | 4 [2] | [2] 4 | h16_B0761/h16_B0762 | transcriptional regulator, TetR/AcrR‑family/conserved hypothetical membrane protein |
| * | * | ÷ | AM260480 | 1086807 | 1086886 | 80 | 4 [3] | [3] 4 | h16_B0964 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1482256 | 1482307 | 52 | 4 [2] | [3] 5 | [h16_B1335] | [h16_B1335] |
| * | * | ÷ | AM260480 | 1632945 | 1632996 | 52 | 7 [3] | [2] 4 | [h16_B1458] | [h16_B1458] |
| * | * | ÷ | AM260480 | 1861308 | 1861353 | 46 | 4 [2] | [3] 4 | h16_B1648 | Hypothetical protein |
| * | * | ÷ | AM260480 | 2459836 | 2459910 | 75 | 4 [2] | [3] 4 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2476814 | 2476864 | 51 | 5 [2] | [2] 4 | copS | signal transduction histidine kinase, copper sensor |
| * | * | ÷ | AM260480 | 2532167 | 2532209 | 43 | 4 [2] | [2] 4 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2647109 | 2647193 | 85 | 5 [3] | [3] 5 | h16_B2337 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2710212 | 2710225 | 14 | 4 [2] | [3] 5 | h16_B2399 | uncharacterized conserved protein |
| * | * | ÷ | AM260480 | 2866432 | 2866474 | 43 | 4 [1] | [3] 5 | h16_B2539 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 1 | 111 | 111 | NA [0] | [0] 2 | –/hoxK | –/membrane‑bound [NiFe] hydrogenase small subunit |
| * | * | ÷ | AY305378 | 219 | 469 | 251 | 2 [0] | [1] 2 | hoxK | membrane‑bound [NiFe] hydrogenase small subunit |
| * | * | ÷ | AY305378 | 716 | 1104 | 389 | 2 [1] | [0] 2 | hoxK | membrane‑bound [NiFe] hydrogenase small subunit |
| * | * | ÷ | AY305378 | 1180 | 1249 | 70 | 2 [0] | [0] 2 | [hoxK]–[hoxG] | [hoxK],[hoxG] |
| * | * | ÷ | AY305378 | 1293 | 2005 | 713 | 2 [0] | [0] 2 | hoxG | membrane‑bound [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 2086 | 2193 | 108 | 2 [0] | [0] 2 | hoxG | membrane‑bound [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 2298 | 2660 | 363 | 2 [0] | [1] 2 | hoxG | membrane‑bound [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 2729 | 3087 | 359 | 2 [1] | [0] 2 | hoxG | membrane‑bound [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 3163 | 3709 | 547 | 3 [1] | [0] 2 | hoxZ | membrane‑bound hydrogenase‑linked b‑type cytochrome |
| * | * | ÷ | AY305378 | 3857 | 4136 | 280 | 2 [0] | [0] 2 | [hoxZ]–[PHG004] | [hoxZ],[PHG004] |
| * | * | ÷ | AY305378 | 4175 | 4607 | 433 | 2 [0] | [0] 2 | [PHG004]–[hoxM] | [PHG004],[hoxM] |
| * | * | ÷ | AY305378 | 4701 | 4995 | 295 | 2 [0] | [1] 2 | [hoxM]–[hoxL] | [hoxM],[hoxL] |
| * | * | ÷ | AY305378 | 5104 | 5707 | 604 | 2 [1] | [1] 2 | [hoxL]–[hoxO] | [hoxL],[hoxO] |
| * | * | ÷ | AY305378 | 5796 | 6474 | 679 | 2 [1] | [0] 2 | hoxQ | HoxQ |
| * | * | ÷ | AY305378 | 6676 | 7004 | 329 | 3 [1] | [0] 3 | [hoxR]–[hoxT] | [hoxR],[hoxT] |
| * | * | ÷ | AY305378 | 7139 | 7253 | 115 | 2 [1] | [0] 2 | hoxT | HoxT |
| * | * | ÷ | AY305378 | 7372 | 8413 | 1042 | 2 [0] | [0] 2 | [hoxT]–[hoxV] | [hoxT],[hoxV] |
| * | * | ÷ | AY305378 | 8470 | 8792 | 323 | 2 [0] | [0] 2 | [hoxV]–[hypA1] | [hoxV],[hypA1] |
| * | * | ÷ | AY305378 | 8924 | 9026 | 103 | 3 [1] | [1] 2 | [hypB1] | [hypB1] |
| * | * | ÷ | AY305378 | 9161 | 9339 | 179 | 2 [1] | [1] 2 | hypB1 | HypB1 |
| * | * | ÷ | AY305378 | 9526 | 10174 | 649 | 2 [1] | [0] 2 | [hypB1]–[hypF1] | [hypB1],[hypF1] |
| * | * | ÷ | AY305378 | 10267 | 10399 | 133 | 2 [0] | [0] 2 | hypF1 | HypF1 |
| * | * | ÷ | AY305378 | 10463 | 10969 | 507 | 2 [0] | [0] 2 | hypF1 | HypF1 |
| * | * | ÷ | AY305378 | 11010 | 11925 | 916 | 2 [0] | [1] 3 | [hypF1]–[hypD1] | [hypF1],hypC1,[hypD1] |
| * | * | ÷ | AY305378 | 12125 | 12711 | 587 | 2 [1] | [0] 2 | [hypD1]–[hypE1] | [hypD1],[hypE1] |
| * | * | ÷ | AY305378 | 12773 | 12932 | 160 | 2 [0] | [1] 2 | hypE1 | HypE1 |
| * | * | ÷ | AY305378 | 13023 | 13215 | 193 | 2 [1] | [0] 2 | hypE1 | HypE1 |
| * | * | ÷ | AY305378 | 13265 | 13574 | 310 | 2 [0] | [0] 2 | hypE1 | HypE1 |
| * | * | ÷ | AY305378 | 13654 | 13797 | 144 | 2 [0] | [1] 2 | [hypE1]–[hypX] | [hypE1],[hypX] |
| * | * | ÷ | AY305378 | 13862 | 14930 | 1069 | 2 [1] | [1] 2 | hypX | HypX |
| * | * | ÷ | AY305378 | 15065 | 16253 | 1189 | 3 [0] | [1] 2 | [hypX]–[hoxA] | [hypX],[hoxA] |
| * | * | ÷ | AY305378 | 16368 | 17452 | 1085 | 2 [1] | [0] 2 | [hoxA]–[hoxB] | [hoxA],[hoxB] |
| * | * | ÷ | AY305378 | 17652 | 19569 | 1918 | 3 [1] | [1] 2 | [hoxB]–[hoxJ] | [hoxB],hoxC,[hoxJ] |
| * | * | ÷ | AY305378 | 19698 | 19821 | 124 | 2 [1] | [0] 2 | hoxJ | histidine protein kinase |
| * | * | ÷ | AY305378 | 19907 | 20050 | 144 | 2 [0] | [1] 3 | hoxJ | histidine protein kinase |
| * | * | ÷ | AY305378 | 20157 | 20890 | 734 | 2 [1] | [0] 2 | hoxJ | histidine protein kinase |
| * | * | ÷ | AY305378 | 20997 | 21248 | 252 | 2 [0] | [1] 2 | hoxJ/hoxN1 | histidine protein kinase/high‑affinity nickel permease |
| * | * | ÷ | AY305378 | 21420 | 23290 | 1871 | 2 [0] | [0] 2 | [hoxN1] | [hoxN1] |
| * | * | ÷ | AY305378 | 23352 | 23680 | 329 | 2 [0] | [0] 2 | hoxN1/PHG027 | high‑affinity nickel permease/fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 23729 | 24242 | 514 | 2 [0] | [1] 3 | hoxN1/PHG027 | high‑affinity nickel permease/fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 24332 | 24489 | 158 | 2 [1] | [1] 2 | hoxN1/PHG027 | high‑affinity nickel permease/fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 24569 | 24788 | 220 | 2 [1] | [1] 3 | hoxN1/PHG027 | high‑affinity nickel permease/fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 24911 | 25392 | 482 | 2 [1] | [0] 2 | hoxN1/PHG027 | high‑affinity nickel permease/fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 25514 | 26252 | 739 | 2 [0] | [0] 2 | [PHG027] | [PHG027] |
| * | * | ÷ | AY305378 | 26326 | 26331 | 6 | 2 [0] | [0] 2 | PHG027 | fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 26433 | 27401 | 969 | 2 [0] | [1] 2 | [PHG027]–[PHG028] | [PHG027],[PHG028] |
| * | * | ÷ | AY305378 | 27624 | 27798 | 175 | 2 [0] | [0] 2 | PHG028 | putative TonB‑dependent outer membrane receptor |
| * | * | ÷ | AY305378 | 27927 | 27969 | 43 | 2 [0] | [0] 2 | PHG028 | putative TonB‑dependent outer membrane receptor |
| * | * | ÷ | AY305378 | 28042 | 28483 | 442 | 2 [0] | [1] 2 | PHG028 | putative TonB‑dependent outer membrane receptor |
| * | * | ÷ | AY305378 | 28558 | 28788 | 231 | 2 [1] | [1] 2 | PHG028 | putative TonB‑dependent outer membrane receptor |
| * | * | ÷ | AY305378 | 28853 | 28924 | 72 | 2 [1] | [0] 2 | PHG028/PHG029 | putative TonB‑dependent outer membrane receptor/putative transposase |
| * | * | ÷ | AY305378 | 29045 | 29718 | 674 | 2 [0] | [0] 2 | PHG029–[PHG030] | PHG029,[PHG030] |
| * | * | ÷ | AY305378 | 29755 | 30839 | 1085 | 2 [0] | [0] 2 | [PHG030]–PHG032 | [PHG030],PHG031,PHG032 |
| * | * | ÷ | AY305378 | 30964 | 31486 | 523 | 2 [0] | [1] 2 | PHG033 | putative transposase |
| * | * | ÷ | AY305378 | 31552 | 31661 | 110 | 2 [1] | [0] 4 | [PHG033] | [PHG033] |
| * | * | ÷ | AY305378 | 31705 | 32190 | 486 | 4 [0] | [0] 2 | [PHG034]–[PHG035] | [PHG034],[PHG035] |
| * | * | ÷ | AY305378 | 32281 | 32464 | 184 | 2 [0] | [1] 2 | [PHG035]–[PHG036] | [PHG035],[PHG036] |
| * | * | ÷ | AY305378 | 32622 | 32683–32662 | 41–62 | 2 [1] | [0] 2 | PHG036 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 32877 | 33331–33287 | 411–455 | 2 [1] | [0] 2 | [PHG036]–[PHG037] | [PHG036],[PHG037] |
| * | * | ÷ | AY305378 | 33453 | 33929–33899 | 447–477 | 2 [0] | [1] 2 | PHG037 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 34058 | 35189 | 1132 | 3 [1] | [1] 2 | [PHG037]–[PHG038] | [PHG037],[PHG038] |
| * | * | ÷ | AY305378 | 35227 | 35524 | 298 | 2 [1] | [0] 2 | [PHG038] | [PHG038] |
| * | * | ÷ | AY305378 | 35560 | 39313–35981 | 422–3754 | 2 [0] | [0] 2 | PHG039–[PHG042] | PHG039,PHG040,PHG041,[PHG042] |
| * | * | ÷ | AY305378 | 39432–40663 | 41451 | 789–2020 | 2 [0] | [0] 2 | [PHG042]–[PHG044] | [PHG042],[PHG043],[PHG044] |
| * | * | ÷ | AY305378 | 41559 | 41894 | 336 | 2 [0] | [0] 2 | PHG045 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 41946 | 42233 | 288 | 2 [0] | [0] 2 | PHG045 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 42569 | 43179 | 611 | 2 [1] | [1] 2 | PHG046 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 43262 | 45270 | 2009 | 2 [1] | [1] 2 | [PHG046]–[PHG048] | [PHG046],PHG047,[PHG048] |
| * | * | ÷ | AY305378 | 45321 | 45412 | 92 | 2 [1] | [0] 2 | PHG048 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 45500 | 45800 | 301 | 2 [0] | [1] 2 | [PHG048]–[PHG049] | [PHG048],[PHG049] |
| * | * | ÷ | AY305378 | 45935 | 46063 | 129 | 2 [1] | [0] 2 | [PHG049]–[PHG050] | [PHG049],[PHG050] |
| * | * | ÷ | AY305378 | 46135 | 46903 | 769 | 2 [0] | [0] 3 | [PHG050]–PHG051 | [PHG050],PHG051 |
| * | * | ÷ | AY305378 | 46971 | 47817 | 847 | 3 [1] | [1] 2 | PHG052–[PHG053] | PHG052,[PHG053] |
| * | * | ÷ | AY305378 | 47892 | 48286 | 395 | 2 [1] | [0] 2 | PHG053 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 48410 | 48506 | 97 | 2 [0] | [1] 3 | PHG053 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 48677 | 48777 | 101 | 2 [0] | [0] 2 | PHG053 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 48823 | 49393 | 571 | 2 [0] | [0] 2 | [PHG053]–[PHG054] | [PHG053],[PHG054] |
| * | * | ÷ | AY305378 | 49528 | 49943 | 416 | 4 [0] | [0] 2 | PHG054 | hypothetical protein |
| * | * | ÷ | AY305378 | 50023 | 50377 | 355 | 2 [0] | [1] 2 | PHG054 | hypothetical protein |
| * | * | ÷ | AY305378 | 50481 | 50666 | 186 | 2 [1] | [0] 2 | PHG054 | hypothetical protein |
| * | * | ÷ | AY305378 | 50756 | 51311 | 556 | 2 [0] | [0] 2 | [PHG054]–[PHG055] | [PHG054],[PHG055] |
| * | * | ÷ | AY305378 | 51439 | 51927 | 489 | 2 [0] | [0] 2 | [PHG056] | [PHG056] |
| * | * | ÷ | AY305378 | 51967 | 52428 | 462 | 3 [1] | [1] 2 | PHG056 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 52507 | 52583 | 77 | 2 [1] | [1] 3 | PHG056 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 52680 | 53641 | 962 | 3 [1] | [1] 5 | [PHG056]–[PHG057] | [PHG056],[PHG057] |
| * | * | ÷ | AY305378 | 53714 | 53858 | 145 | 2 [0] | [1] 2 | PHG058 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 53993 | 53996 | 4 | 2 [1] | [0] 2 | PHG058 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 54073 | 54213 | 141 | 2 [0] | [0] 2 | PHG058 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 54314 | 55002 | 689 | 2 [0] | [0] 2 | [PHG058]–[PHG059] | [PHG058],[PHG059] |
| * | * | ÷ | AY305378 | 55126 | 55591 | 466 | 2 [0] | [0] 2 | PHG059 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 55680 | 56038 | 359 | 2 [0] | [0] 2 | PHG059 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 56175 | 57727 | 1553 | 2 [1] | [0] 2 | [PHG059]–[PHG061] | [PHG059],PHG060,[PHG061] |
| * | * | ÷ | AY305378 | 57918 | 58500 | 583 | 2 [0] | [0] 2 | [PHG061]–PHG062 | [PHG061],PHG062 |
| * | * | ÷ | AY305378 | 58635 | 58738 | 104 | 2 [0] | [0] 2 | hoxN2 | putative nickel permease |
| * | * | ÷ | AY305378 | 58852 | 59022 | 171 | 2 [0] | [0] 2 | hoxN2 | putative nickel permease |
| * | * | ÷ | AY305378 | 59189 | 59558 | 370 | 2 [1] | [0] 2 | hoxN2 | putative nickel permease |
| * | * | ÷ | AY305378 | 59696 | 60777 | 1082 | 3 [1] | [0] 2 | [PHG064] | [PHG064] |
| * | * | ÷ | AY305378 | 60872 | 61345 | 474 | 2 [0] | [0] 2 | [PHG064]–[PHG065] | [PHG064],[PHG065] |
| * | * | ÷ | AY305378 | 61502 | 61942 | 441 | 2 [1] | [1] 2 | PHG065 | putative [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 62014 | 62300 | 287 | 2 [1] | [0] 2 | PHG065 | putative [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 62354 | 62475 | 122 | 2 [0] | [0] 2 | PHG065 | putative [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 62512 | 62683 | 172 | 2 [0] | [0] 2 | PHG065 | putative [NiFe] hydrogenase large subunit |
| * | * | ÷ | AY305378 | 62782 | 63489 | 708 | 3 [1] | [0] 2 | [PHG065]–[PHG067] | [PHG065],PHG066,[PHG067] |
| * | * | ÷ | AY305378 | 63584 | 64309 | 726 | 2 [0] | [1] 2 | [PHG067]–[PHG068] | [PHG067],[PHG068] |
| * | * | ÷ | AY305378 | 64550 | 65293 | 744 | 2 [0] | [1] 2 | [PHG068]–[PHG069] | [PHG068],[PHG069] |
| * | * | ÷ | AY305378 | 65433 | 65940 | 508 | 2 [0] | [1] 2 | PHG069 | hypothetical protein |
| * | * | ÷ | AY305378 | 66041 | 66088 | 48 | 2 [1] | [0] 2 | PHG069 | hypothetical protein |
| * | * | ÷ | AY305378 | 66189 | 66880 | 692 | 2 [0] | [1] 2 | [PHG070]–PHG071 | [PHG070],PHG071 |
| * | * | ÷ | AY305378 | 66996 | 67235 | 240 | 2 [1] | [0] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 67341 | 67381 | 41 | 2 [0] | [0] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 67460 | 67935 | 476 | 2 [0] | [1] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 68164 | 68241 | 78 | 2 [1] | [0] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 68368 | 68517 | 150 | 2 [0] | [0] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 68570 | 69291 | 722 | 2 [0] | [0] 2 | hypF3 | HypF3 |
| * | * | ÷ | AY305378 | 69390 | 69493 | 104 | 2 [0] | [0] 2 | hypC2 | HypC2 |
| * | * | ÷ | AY305378 | 69555 | 70320 | 766 | 2 [0] | [0] 3 | [hypC2]–[gmhA] | [hypC2],[gmhA] |
| * | * | ÷ | AY305378 | 70455 | 72448 | 1994 | 2 [1] | [0] 2 | [hypD2]–[hypE2] | [hypD2],[hypE2] |
| * | * | ÷ | AY305378 | 72509 | 73930 | 1422 | 2 [0] | [1] 2 | [hypE2]–[hypB3] | [hypE2],hypA3,[hypB3] |
| * | * | ÷ | AY305378 | 73967 | 74215 | 249 | 2 [1] | [0] 2 | [hypB3] | [hypB3] |
| * | * | ÷ | AY305378 | 74305 | 74683 | 379 | 2 [0] | [1] 2 | [PHG079] | [PHG079] |
| * | * | ÷ | AY305378 | 74802 | 75127 | 326 | 2 [1] | [1] 2 | PHG079 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 75194 | 75322 | 129 | 2 [1] | [1] 2 | PHG079 PHG080 |
conserved hypothetical protein conserved hypothetical protein |
| * | * | ÷ | AY305378 | 75447 | 76192 | 746 | 2 [1] | [1] 2 | [PHG080]–[PHG081] | [PHG080],[PHG081] |
| * | * | ÷ | AY305378 | 76326 | 77388 | 1063 | 2 [1] | [0] 2 | [PHG081]–PHG082 | [PHG081],PHG082 |
| * | * | ÷ | AY305378 | 77477 | 77810 | 334 | 2 [0] | [0] 2 | PHG083 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 77890 | 78020 | 131 | 2 [0] | [0] 2 | PHG084 | putative transposase |
| * | * | ÷ | AY305378 | 78163 | 78204 | 42 | 2 [1] | [0] 2 | PHG084 | putative transposase |
| * | * | ÷ | AY305378 | 78282 | 79396 | 1115 | 2 [0] | [0] 2 | [PHG085]–PHG087 | [PHG085],PHG086,PHG087 |
| * | * | ÷ | AY305378 | 79524 | 79634 | 111 | 2 [0] | [0] 2 | PHG087/hoxF | putative transposase/NAD‑reducing hydrogenase diaphorase moiety large subunit |
| * | * | ÷ | AY305378 | 79685 | 79707 | 23 | 2 [0] | [0] 2 | PHG087/hoxF | putative transposase/NAD‑reducing hydrogenase diaphorase moiety large subunit |
| * | * | ÷ | AY305378 | 79792 | 80642 | 851 | 3 [1] | [1] 3 | hoxF | NAD‑reducing hydrogenase diaphorase moiety large subunit |
| * | * | ÷ | AY305378 | 80716 | 80874 | 159 | 3 [1] | [0] 2 | hoxF | NAD‑reducing hydrogenase diaphorase moiety large subunit |
| * | * | ÷ | AY305378 | 81122 | 82128 | 1007 | 2 [0] | [0] 2 | [hoxF]–[hoxU] | [hoxF],[hoxU] |
| * | * | ÷ | AY305378 | 82260 | 82380 | 121 | 2 [1] | [1] 2 | hoxY | NAD‑reducing hydrogenase hydrogenase moiety small subunit |
| * | * | ÷ | AY305378 | 82515 | 83619 | 1105 | 2 [1] | [0] 2 | [hoxY]–[hoxH] | [hoxY],[hoxH] |
| * | * | ÷ | AY305378 | 83693 | 84154 | 462 | 2 [0] | [0] 2 | hoxH | NAD‑reducing hydrogenase hydrogenase moiety large subunit |
| * | * | ÷ | AY305378 | 84265 | 84546 | 282 | 2 [0] | [1] 2 | [hoxH]–[hoxW] | [hoxH],[hoxW] |
| * | * | ÷ | AY305378 | 84634 | 84809 | 176 | 2 [1] | [0] 33 | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| * | * | ÷ | AY305378 | 85316 | 85346 | 31 | 2 [0] | [0] 6 | [hoxI] | [hoxI] |
| * | * | ÷ | AY305378 | 92724 | 92740 | 17 | 2 [0] | [1] 3 | PHG099/PHG100 | putative integrase/recombinase/unknown |
| * | * | ÷ | AY305378 | 99898 | 100067 | 170 | 2 [1] | [1] 3 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 100123 | 100131 | 9 | 2 [0] | [0] 2 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 100177 | 100235 | 59 | 2 [0] | [0] 2 | kfrA1 | putative KfrA protein |
| * | * | ÷ | AY305378 | 112205 | 112230 | 26 | 3 [0] | [0] 2 | PHG115 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 117458 | 117550 | 93 | 3 [1] | [0] 4 | lysA | putative diaminopimelate decarboxylase |
| * | * | ÷ | AY305378 | 120517 | 120639 | 123 | 4 [1] | [0] 2 | PHG123 | putative efflux protein |
| * | * | ÷ | AY305378 | 151766 | 151868 | 103 | 2 [1] | [0] 2 | PHG152/PHG153 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 156281 | 156344 | 64 | 2 [0] | [1] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 156501 | 156621 | 121 | 2 [0] | [1] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 156736 | 156764 | 29 | 2 [1] | [1] 2 | kfrA2 | putative KfrA‑like protein |
| * | * | ÷ | AY305378 | 205011 | 205123 | 113 | 2 [1] | [1] 2 | helZ3 | putative helicase, superfamily II |
| * | * | ÷ | AY305378 | 217332 | 217400 | 69 | 2 [0] | [0] 2 | PHG196 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 230364 | 230381 | 18 | 3 [1] | [1] 2 | napA | periplasmic nitrate reductase large subunit |
| * | * | ÷ | AY305378 | 241714 | 241739 | 26 | 2 [0] | [0] 2 | PHG223/PHG224 | putative transposase/hypothetical protein |
| * | * | ÷ | AY305378 | 242527 | 242533 | 7 | 3 [0] | [0] 2 | PHG225 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 251348 | 251368 | 21 | 2 [1] | [0] 4 | PHG236 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 271209 | 271322 | 114 | 3 [1] | [1] 2 | nosX | NosX |
| * | * | ÷ | AY305378 | 273972 | 274174 | 203 | 2 [1] | [1] 3 | [PHG257] | [PHG257] |
| * | * | ÷ | AY305378 | 278163 | 278189 | 27 | 3 [1] | [1] 2 | PHG263 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 304785 | 304843 | 59 | 2 [1] | [1] 5 | PHG286 | putative integrase/recombinase |
| * | * | ÷ | AY305378 | 331654 | 331675 | 22 | 3 [1] | [0] 2 | PHG315 | hypothetical protein |
| * | * | ÷ | AY305378 | 351885 | 351892 | 8 | 2 [0] | [0] 2 | PHG337/PHG338 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 374553 | 374563 | 11 | 2 [0] | [0] 2 | [trbD] | [trbD] |
| * | * | ÷ | AY305378 | 379198 | 379200 | 3 | 2 [0] | [1] 2 | PHG365 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 387583 | 387598 | 16 | 3 [0] | [0] 2 | repA | putative replication protein |
| * | * | ÷ | AY305378 | 395541 | 395631 | 91 | 2 [0] | [1] 3 | [xerD] | [xerD] |
| * | * | ÷ | AY305378 | 404258 | 404266 | 9 | 2 [1] | [0] 2 | tutC/mmlJ | putative regulatory protein/putative methylmuconolactone isomerase |
| * | * | ÷ | AY305378 | 411562 | 411611 | 50 | 7 [0] | [0] 2 | nagM4 | putative NagM‑like protein |
| * | * | ÷ | AY305378 | 411654 | 412457 | 804 | 2 [0] | [0] 2 | [nagM4]–[catB2] | [nagM4],PHG393,[catB2] |
| * | * | ÷ | AY305378 | 412599 | 413301 | 703 | 2 [1] | [1] 3 | catB2 | putative muconate cycloisomerase |
| * | * | ÷ | AY305378 | 413430 | 413532 | 103 | 2 [1] | [0] 2 | [catB2] | [catB2] |
| * | * | ÷ | AY305378 | 413645 | 413911 | 267 | 2 [0] | [0] 3 | [PHG395] | [PHG395] |
| * | * | ÷ | AY305378 | 414046 | 415110 | 1065 | 2 [1] | [0] 2 | [PHG395]–[nagM3] | [PHG395],[nagM3] |
| * | * | ÷ | AY305378 | 415230 | 415468 | 239 | 2 [0] | [0] 2 | nagM3 | putative NagM‑like protein |
| * | * | ÷ | AY305378 | 415628 | 415796 | 169 | 2 [1] | [0] 2 | [nagM3]–[PHG397] | [nagM3],[PHG397] |
| * | * | ÷ | AY305378 | 415917 | 416417 | 501 | 2 [0] | [1] 3 | [PHG397]–[fadD2] | [PHG397],[fadD2] |
| * | * | ÷ | AY305378 | 416548 | 417084 | 537 | 2 [1] | [1] 3 | fadD2 | putative long‑chain‑fatty‑acid‑CoA ligase |
| * | * | ÷ | AY305378 | 417194 | 418628 | 1435 | 3 [0] | [1] 2 | [fadD2]–[fadD1] | [fadD2],[fadD1] |
| * | * | ÷ | AY305378 | 418788 | 419108 | 321 | 2 [1] | [1] 2 | fadD1 | putative long‑chain‑fatty‑acid‑CoA ligase |
| * | * | ÷ | AY305378 | 419262 | 420383 | 1122 | 2 [0] | [1] 2 | [fadD1]–[nagM2] | [fadD1],[nagM2] |
| * | * | ÷ | AY305378 | 420518 | 420822 | 305 | 2 [1] | [0] 4 | [PHG401] | [PHG401] |
| * | * | ÷ | AY305378 | 420899 | 421068 | 170 | 4 [0] | [1] 2 | PHG401 | putative regulatory protein |
| * | * | ÷ | AY305378 | 421188 | 421433 | 246 | 2 [1] | [1] 2 | PHG401 | putative regulatory protein |
| * | * | ÷ | AY305378 | 421572 | 422446 | 875 | 2 [0] | [0] 2 | [nagM5] | [nagM5] |
| * | * | ÷ | AY305378 | 422638 | 423322 | 685 | 2 [1] | [0] 2 | [nagM5] | [nagM5] |
| * | * | ÷ | AY305378 | 423372 | 423673 | 302 | 2 [0] | [1] 2 | [nagM1] | [nagM1] |
| * | * | ÷ | AY305378 | 423850 | 423870 | 21 | 2 [1] | [0] 2 | nagM1 | putative NagM‑like protein |
| * | * | ÷ | AY305378 | 423938 | 424526 | 589 | 2 [0] | [0] 2 | [nagM1] | [nagM1] |
| * | * | ÷ | AY305378 | 424652 | 424741 | 90 | 2 [0] | [0] 2 | catC | putative muconolactone isomerase |
| * | * | ÷ | AY305378 | 424805 | 425229 | 425 | 2 [0] | [0] 2 | [catC]–[catB1] | [catC],[catB1] |
| * | * | ÷ | AY305378 | 425339–425366 | 425555 | 190–217 | 2 [0] | [1] 2 | catB1 | putative muconate cycloisomerase |
| * | * | ÷ | AY305378 | 425630 | 426374 | 745 | 2 [1] | [1] 2 | [catB1]–PHG406 | [catB1],PHG406 |
| * | * | ÷ | AY305378 | 426480 | 426664 | 185 | 2 [1] | [0] 2 | [tniA] | [tniA] |
| * | * | ÷ | AY305378 | 426706 | 427258 | 553 | 2 [0] | [0] 2 | tniA | putative TniA‑like transposition protein |
| * | * | ÷ | AY305378 | 427350 | 427374 | 25 | 2 [0] | [1] 2 | tniA | putative TniA‑like transposition protein |
| * | * | ÷ | AY305378 | 427504 | 428600 | 1097 | 2 [1] | [0] 2 | [tniA]–[tniB] | [tniA],[tniB] |
| * | * | ÷ | AY305378 | 428646 | 428719 | 74 | 2 [0] | [1] 3 | tniB | putative TniB‑like transposition protein |
| * | * | ÷ | AY305378 | 428883 | 429011 | 129 | 2 [1] | [0] 2 | [tniB]–[tniQ] | [tniB],[tniQ] |
| * | * | ÷ | AY305378 | 429071 | 429091 | 21 | 4 [0] | [0] 2 | tniQ | putative TniQ‑like transposition protein |
| * | * | ÷ | AY305378 | 429331 | 430108 | 778 | 2 [1] | [0] 2 | [tniQ]–[tnpA] | [tniQ],PHG410,[tnpA] |
| * | * | ÷ | AY305378 | 430222 | 430356 | 135 | 3 [1] | [1] 3 | tnpA | truncated transposase |
| * | * | ÷ | AY305378 | 430392 | 430677 | 286 | 3 [1] | [0] 2 | tnpA | truncated transposase |
| * | * | ÷ | AY305378 | 430804 | 430839 | 36 | 2 [0] | [0] 2 | tnpA | truncated transposase |
| * | * | ÷ | AY305378 | 430962 | 431304 | 343 | 2 [0] | [0] 2 | [tnpA] | [tnpA] |
| * | * | ÷ | AY305378 | 431433 | 431795 | 363 | 2 [0] | [0] 2 | tnpA/tnpA | truncated transposase/putative transposase |
| * | * | ÷ | AY305378 | 431851 | 432082 | 232 | 2 [0] | [0] 2 | tnpA/tnpA | truncated transposase/putative transposase |
| * | * | ÷ | AY305378 | 432162 | 432216 | 55 | 2 [0] | [1] 2 | tnpA/tnpA | truncated transposase/putative transposase |
| * | * | ÷ | AY305378 | 432454 | 432771 | 318 | 2 [1] | [0] 2 | tnpA | putative transposase |
| * | * | ÷ | AY305378 | 432808 | 432869 | 62 | 2 [0] | [0] 2 | tnpA | putative transposase |
| * | * | ÷ | AY305378 | 432940 | 433511 | 572 | 2 [0] | [0] 2 | [tnpA] | [tnpA] |
| * | * | ÷ | AY305378 | 433570 | 433621 | 52 | 2 [0] | [0] 2 | tnpA/PHG413 | putative transposase/hypothetical protein |
| * | * | ÷ | AY305378 | 433698 | 433757 | 60 | 2 [0] | [1] 3 | [PHG413] | [PHG413] |
| * | * | ÷ | AY305378 | 433863 | 433998 | 136 | 3 [1] | [1] 2 | [PHG413] | [PHG413] |
| * | * | ÷ | AY305378 | 434066 | 434236 | 171 | 2 [1] | [0] 2 | [PHG414] | [PHG414] |
| * | * | ÷ | AY305378 | 434310 | 434348 | 39 | 2 [0] | [0] 2 | PHG414 | putative NADH dehydrogenase |
| * | * | ÷ | AY305378 | 434395 | 434420 | 26 | 2 [0] | [0] 2 | PHG414 | putative NADH dehydrogenase |
| * | * | ÷ | AY305378 | 434569 | 436404 | 1836 | 2 [1] | [1] 2 | [PHG414]–[tnpA] | [PHG414],[tnpA] |
| * | * | ÷ | AY305378 | 436414 | 436678 | 265 | 2 [1] | [1] 2 | tnpA | putative transposase of IS885 |
| * | * | ÷ | AY305378 | 436681 | 436886 | 206 | 2 [1] | [0] 2 | tnpA | putative transposase of IS885 |
| * | * | ÷ | AY305378 | 436988 | 437509 | 522 | 2 [0] | [0] 2 | [tnpA] | [tnpA] |
| * | * | ÷ | AY305378 | 437633 | 438310 | 678 | 2 [0] | [1] 2 | [cbbAp] | [cbbAp] |
| * | * | ÷ | AY305378 | 438420 | 440149 | 1730 | 2 [1] | [0] 2 | [cbbAp]–[cbbKp] | [cbbAp],[cbbKp] |
| * | * | ÷ | AY305378 | 440263 | 440945 | 683 | 2 [0] | [1] 2 | cbbGp | glyceraldehyde‑3‑phosphate dehydrogenase |
| * | * | ÷ | AY305378 | 440992 | 442190 | 1199 | 2 [1] | [0] 2 | [cbbGp]–[cbbTp] | [cbbGp],cbbZp,[cbbTp] |
| * | * | ÷ | AY305378 | 442317 | 442396 | 80 | 2 [0] | [0] 2 | cbbTp | transketolase |
| * | * | ÷ | AY305378 | 442506 | 442546 | 41 | 2 [0] | [0] 2 | cbbTp | transketolase |
| * | * | ÷ | AY305378 | 442646 | 443690 | 1045 | 2 [0] | [0] 2 | cbbTp | transketolase |
| * | * | ÷ | AY305378 | 443817 | 444236 | 420 | 2 [0] | [1] 2 | [cbbTp]–[cbbPp] | [cbbTp],[cbbPp] |
| * | * | ÷ | AY305378 | 444316 | 445166 | 851 | 2 [1] | [1] 2 | [cbbPp]–[cbbFp] | [cbbPp],[cbbFp] |
| * | * | ÷ | AY305378 | 445584 | 445797 | 214 | 3 [1] | [1] 2 | cbbFp | fructose‑1,6‑bisphosphate |
| * | * | ÷ | AY305378 | 445892 | 446046 | 155 | 2 [1] | [1] 2 | [cbbFp]–[cbbEp] | [cbbFp],[cbbEp] |
| * | * | ÷ | AY305378 | 446111 | 446700 | 590 | 2 [1] | [0] 2 | cbbEp | ribulose‑5‑phosphate 3‑epimerase |
| * | * | ÷ | AY305378 | 446789 | 446881 | 93 | 2 [0] | [0] 2 | cbbYp | CbbY |
| * | * | ÷ | AY305378 | 446953 | 448489 | 1537 | 2 [0] | [0] 2 | [cbbYp]–cbbXp | [cbbYp],cbbXp |
| * | * | ÷ | AY305378 | 448546 | 449017 | 472 | 2 [0] | [0] 2 | cbbSp | cbbSp |
| * | * | ÷ | AY305378 | 449122 | 449715 | 594 | 2 [0] | [1] 2 | cbbLp | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit |
| * | * | ÷ | AY305378 | 449799 | 450136–450120 | 322–338 | 2 [1] | [1] 2 | cbbLp | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit |
| * | * | ÷ | AY305378 | 450269 | 451373 | 1105 | 2 [1] | [0] 2 | [cbbLp] | [cbbLp] |
| * | * | ÷ | AY305378 | 451419 | 451461 | 43 | 2 [0] | [0] 2 | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– |
| * | * | ÷ | AY305378 | 451591 | 452156 | 566 | 2 [0] | [0] NA | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 90265 | 16 (0.650) | 3 (0.140) +GCAGCAGCAAGCC |
3/190 | 1.9 | 20.8% | coding (262/1233 nt) | h16_A0075 | MFS transporter, fosmidomycin resistance family |
| ? | AM260479 | 2786850 = | 10 (0.410) | coding (2167/3075 nt) | cafA2 | Ribonuclease G and E | |||||
| * | ? | AM260479 | 123230 = | 13 (0.530) | 4 (0.180) | 4/200 | 1.7 | 27.6% | coding (508/1032 nt) | h16_A0109 | dienelactone hydrolase or related enzyme |
| ? | AM260479 | 123280 = | 9 (0.400) | coding (458/1032 nt) | h16_A0109 | dienelactone hydrolase or related enzyme | |||||
| * | ? | AM260479 | 131809 = | 15 (0.610) | 6 (0.260) | 4/200 | 1.7 | 30.9% | coding (2267/2307 nt) | ftsI2 | cell elongation specific D,D‑transpeptidase |
| ? | AM260479 | 131827 = | 13 (0.570) | coding (2285/2307 nt) | ftsI2 | cell elongation specific D,D‑transpeptidase | |||||
| * | ? | AM260479 | = 433113 | 21 (0.860) | 6 (0.260) | 5/204 | 1.5 | 23.2% | coding (291/624 nt) | pilV3 | Type IV pilus assembly protein PilV |
| ? | AM260479 | 433139 = | 20 (0.860) | coding (317/624 nt) | pilV3 | Type IV pilus assembly protein PilV | |||||
| * | ? | AM260479 | = 442301 | 19 (0.780) | 5 (0.220) | 5/202 | 1.5 | 22.3% | coding (709/981 nt) | h16_A0423 | multidrug resistance efflux pump |
| ? | AM260479 | = 442324 | 17 (0.740) | coding (686/981 nt) | h16_A0423 | multidrug resistance efflux pump | |||||
| * | ? | AM260479 | 497543 = | 19 (0.780) | 4 (0.180) | 3/200 | 2.0 | 21.9% | coding (723/984 nt) | h16_A0470 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 497596 = | 11 (0.480) | coding (776/984 nt) | h16_A0470 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | = 586233 | 18 (0.730) | 5 (0.220) | 3/198 | 2.0 | 23.0% | coding (482/1023 nt) | rfaF3 | ADP‑heptose:LPS heptosyltransferase III |
| ? | AM260479 | = 586236 | 17 (0.760) | coding (479/1023 nt) | rfaF3 | ADP‑heptose:LPS heptosyltransferase III | |||||
| * | ? | AM260479 | = 615786 | 10 (0.410) | 4 (0.180) | 4/200 | 1.7 | 27.3% | coding (2934/3123 nt) | acrB1b | Cation/multidrug efflux pump |
| ? | AM260479 | = 615806 | 12 (0.530) | coding (2914/3123 nt) | acrB1b | Cation/multidrug efflux pump | |||||
| * | ? | AM260479 | = 1558904 | 16 (0.650) | 4 (0.180) | 4/198 | 1.7 | 21.8% | coding (1552/1770 nt) | phaC1 | Poly(3‑hydroxybutyrate) polymerase |
| ? | AM260479 | = 1558961 | 14 (0.620) | coding (1609/1770 nt) | phaC1 | Poly(3‑hydroxybutyrate) polymerase | |||||
| * | ? | AM260479 | 1864240 = | 17 (0.690) | 10 (0.860) | 6/102 | 0.5 | 71.4% | intergenic (+776/‑280) | h16_A1704/h16_A1706 | transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily |
| ? | AM260479 | = 1864288 | 0 (0.000) | intergenic (+824/‑232) | h16_A1704/h16_A1706 | transcriptional regulator, LysR‑family/putative peptidase, S08A subfamily | |||||
| * | ? | AM260479 | = 2105300 | 22 (0.900) | 5 (0.230) | 4/194 | 1.7 | 20.5% | coding (40/1020 nt) | h16_A1938 | TRAP‑type transporter, periplasmic component |
| ? | AM260479 | = 2105346 | 19 (0.860) | coding (86/1020 nt) | h16_A1938 | TRAP‑type transporter, periplasmic component | |||||
| * | ? | AM260479 | 2217329 = | 23 (0.940) | 5 (0.220) | 5/202 | 1.5 | 22.0% | coding (53/717 nt) | rnhB | Ribonuclease HII |
| ? | AM260479 | 2217398 = | 14 (0.610) | coding (1192/1209 nt) | lpxB | Lipid‑A‑disaccharide synthase | |||||
| * | ? | AM260479 | = 2266909 | 15 (0.610) | 7 (0.310) | 7/202 | 1.2 | 31.1% | coding (26/1656 nt) | h16_A2085 | ABC‑type transporter, duplicated ATPase domains:CUT2 family |
| ? | AM260479 | = 2266919 | 17 (0.740) | coding (36/1656 nt) | h16_A2085 | ABC‑type transporter, duplicated ATPase domains:CUT2 family | |||||
| * | ? | AM260479 | 2525623 = | 23 (0.940) | 6 (0.260) | 4/202 | 1.8 | 22.4% | coding (75/747 nt) | ugpQ | glycerophosphoryl diester phosphodiesterase |
| ? | AM260479 | 2525645 = | 20 (0.870) | coding (53/747 nt) | ugpQ | glycerophosphoryl diester phosphodiesterase | |||||
| * | ? | AM260479 | 2663273 = | 12 (0.490) | 3 (0.130) | 3/200 | 2.0 | 23.9% | coding (1827/1884 nt) | ftsH | FtsH endopeptidase |
| ? | AM260479 | 2663319 = | 8 (0.350) | coding (1781/1884 nt) | ftsH | FtsH endopeptidase | |||||
| * | ? | AM260479 | = 2960169 | 12 (0.490) | 3 (0.130) | 3/198 | 2.0 | 23.1% | coding (520/1326 nt) | ndh | NADH dehydrogenase type2 |
| ? | AM260479 | = 2960279 | 9 (0.400) | coding (410/1326 nt) | ndh | NADH dehydrogenase type2 | |||||
| * | ? | AM260479 | = 2962711 | 12 (0.490) | 4 (0.180) | 4/200 | 1.7 | 24.2% | coding (952/2817 nt) | polA | DNA polymerase I |
| ? | AM260479 | = 2962742 | 14 (0.620) | coding (921/2817 nt) | polA | DNA polymerase I | |||||
| * | ? | AM260479 | 2964891 = | 7 (0.290) | 6 (0.260) | 6/202 | 1.3 | 48.9% | coding (57/435 nt) | h16_A2743 | hypothetical membrane associated protein |
| ? | AM260479 | 2964938 = | 6 (0.260) | coding (104/435 nt) | h16_A2743 | hypothetical membrane associated protein | |||||
| * | ? | AM260479 | = 3338834 | 23 (0.940) | 4 (0.290) +47 bp |
4/122 | 1.1 | 22.4% | coding (60/699 nt) | h16_A3086 | ABC‑type transporter, ATPase component |
| ? | AM260479 | 3338882 = | 26 (1.060) | coding (108/699 nt) | h16_A3086 | ABC‑type transporter, ATPase component | |||||
| * | ? | AM260479 | = 3548643 | 14 (0.570) | 4 (0.180) | 4/200 | 1.7 | 26.7% | coding (878/1002 nt) | h16_A3281 | conserved hypothetical protein |
| ? | AM260479 | = 3548669 | 9 (0.400) | coding (852/1002 nt) | h16_A3281 | conserved hypothetical protein | |||||
| * | ? | AM260479 | = 3651513 | 17 (0.690) | 5 (0.250) +GGTGTCGATGCGGTGGATTT |
4/176 | 1.6 | 27.1% | coding (145/2292 nt) | coxL5 | Aerobic‑type carbon monoxide dehydrogenase homolog, large subunit |
| ? | AM260479 | 3651534 = | 16 (0.650) | coding (166/2292 nt) | coxL5 | Aerobic‑type carbon monoxide dehydrogenase homolog, large subunit | |||||
| * | ? | AM260479 | = 3804305 | 5 (0.200) | 4 (0.180) | 3/196 | 2.0 | 37.1% | coding (465/702 nt) | h16_A3532 | conserved hypothetical protein |
| ? | AM260479 | 3804336 = | 9 (0.400) | coding (434/702 nt) | h16_A3532 | conserved hypothetical protein | |||||
| * | ? | AM260479 | 3812807 = | 13 (0.530) | 3 (0.130) | 3/200 | 2.0 | 25.0% | coding (479/810 nt) | gspN | general secretion pathway protein N |
| ? | AM260479 | 3812825 = | 6 (0.260) | coding (497/810 nt) | gspN | general secretion pathway protein N | |||||
| * | ? | AM260480 | 59241 = | 18 (0.540) | 4 (0.140) | 4/184 | 2.2 | 21.4% | coding (552/696 nt) | h16_B0050 | predicted phosphoribosyltransferase |
| ? | AM260480 | 59257 = | 14 (0.490) | coding (568/696 nt) | h16_B0050 | predicted phosphoribosyltransferase | |||||
| * | ? | AM260480 | = 134942 | 13 (0.390) | 4 (0.130) | 3/202 | 2.7 | 21.0% | coding (268/1644 nt) | h16_B0118 | uncharacterized iron‑regulated membrane protein |
| ? | AM260480 | = 134979 | 18 (0.570) | coding (305/1644 nt) | h16_B0118 | uncharacterized iron‑regulated membrane protein | |||||
| * | ? | AM260480 | = 212874 | 25 (0.740) | 7 (0.230) | 7/196 | 1.7 | 23.5% | coding (147/927 nt) | tadB3 | flp pilus assembly protein TadB |
| ? | AM260480 | = 212877 | 23 (0.750) | coding (150/927 nt) | tadB3 | flp pilus assembly protein TadB | |||||
| * | ? | AM260480 | = 267001 | 16 (0.480) | 4 (0.130) +TGCATCTCCTGC |
4/192 | 2.3 | 21.4% | coding (861/966 nt) | motB | Chemotaxis protein |
| ? | AM260480 | 267062 = | 17 (0.510) | coding (922/966 nt) | motB | Chemotaxis protein | |||||
| * | ? | AM260480 | 295099 = | 15 (0.450) | 3 (0.100) | 3/184 | 2.6 | 20.8% | coding (17/438 nt) | flhE | flagellar biosynthesis protein |
| ? | AM260480 | 295115 = | 10 (0.350) | coding (33/438 nt) | flhE | flagellar biosynthesis protein | |||||
| * | ? | AM260480 | = 447082 | 10 (0.300) | 3 (0.100) | 3/202 | 2.7 | 21.2% | coding (581/3873 nt) | h16_B0393 | transcriptional regulator, LuxR‑family |
| ? | AM260480 | = 447092 | 13 (0.410) | coding (591/3873 nt) | h16_B0393 | transcriptional regulator, LuxR‑family | |||||
| * | ? | AM260480 | = 567148 | NA (NA) | 6 (0.190) | 6/200 | 1.9 | NA | coding (171/738 nt) | h16_B0502 | ABC‑type transporter, ATPase component: HAAT family |
| ? | AM260480 | = 567165 | NA (NA) | coding (188/738 nt) | h16_B0502 | ABC‑type transporter, ATPase component: HAAT family | |||||
| * | ? | AM260480 | 735790 = | 23 (0.680) | 6 (0.190) | 6/200 | 1.9 | 25.4% | coding (444/1068 nt) | h16_B0661 | Acyl‑CoA dehydrogenase |
| ? | AM260480 | 735853 = | 14 (0.450) | coding (507/1068 nt) | h16_B0661 | Acyl‑CoA dehydrogenase | |||||
| * | ? | AM260480 | = 740288 | 16 (0.480) | 4 (0.180) +35 bp |
4/146 | 1.8 | 20.5% | coding (636/1203 nt) | h16_B0665 | Acyl‑CoA dehydrogenase |
| ? | AM260480 | 740327 = | 30 (0.890) | coding (675/1203 nt) | h16_B0665 | Acyl‑CoA dehydrogenase | |||||
| * | ? | AM260480 | 780231 = | 24 (0.710) | 7 (0.210) | 6/212 | 2.0 | 21.0% | coding (256/1173 nt) | h16_B0694 | transcriptional regulator, AraC‑family |
| ? | AM260480 | 780263 = | 29 (0.880) | coding (224/1173 nt) | h16_B0694 | transcriptional regulator, AraC‑family | |||||
| * | ? | AM260480 | 843997 = | 14 (0.420) | 4 (0.130) | 4/200 | 2.4 | 20.0% | coding (887/1017 nt) | h16_B0748 | probable extra‑cytoplasmic solute receptor |
| ? | AM260480 | 844066 = | 19 (0.610) | coding (956/1017 nt) | h16_B0748 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260480 | = 1184931 | 16 (0.480) | 4 (0.140) | 4/184 | 2.2 | 23.8% | intergenic (+37/+44) | h16_B1048/pqqE | cytochrome c551/c552/pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein E |
| ? | AM260480 | = 1184915 | 12 (0.420) | intergenic (+21/+60) | h16_B1048/pqqE | cytochrome c551/c552/pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein E | |||||
| * | ? | AM260480 | = 1268314 | 21 (0.620) | 4 (0.190) +41 bp |
4/134 | 1.7 | 24.9% | coding (162/432 nt) | h16_B1118 | conserved hypothetical protein |
| ? | AM260480 | 1268356 = | 18 (0.540) | coding (204/432 nt) | h16_B1118 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 1338138 | 10 (0.300) | 7 (0.290) +31 bp |
4/154 | 1.9 | 50.8% | coding (111/654 nt) | h16_B1183 | transcriptional regulator |
| ? | AM260480 | 1338170 = | 9 (0.270) | coding (143/654 nt) | h16_B1183 | transcriptional regulator | |||||
| * | ? | AM260480 | 1555556 = | NA (NA) | 14 (0.420) | 12/216 | 1.1 | 36.8% | coding (738/2013 nt) | cbbT2 | Transketolase |
| ? | AM260480 | = 1569278 | 24 (0.710) | coding (195/687 nt) | h16_B1400 | transcriptional regulator CRP family | |||||
| * | ? | AM260480 | 1644081 = | 11 (0.330) | 7 (0.230) | 5/196 | 2.1 | 36.9% | coding (461/834 nt) | h16_B1465 | fusaric acid resistance efflux transporter,membrane fusion protein |
| ? | AM260480 | 1644120 = | 14 (0.460) | coding (500/834 nt) | h16_B1465 | fusaric acid resistance efflux transporter,membrane fusion protein | |||||
| * | ? | AM260480 | = 1660476 | 9 (0.270) | 4 (0.130) | 4/198 | 2.4 | 23.4% | coding (459/1341 nt) | h16_B1480 | nitrilotriacetate monooxygenase component A |
| ? | AM260480 | = 1660520 | 18 (0.580) | coding (415/1341 nt) | h16_B1480 | nitrilotriacetate monooxygenase component A | |||||
| * | ? | AM260480 | = 1888529 | 18 (0.540) | 4 (0.130) | 4/194 | 2.3 | 21.5% | coding (377/1632 nt) | h16_B1677 | iron regulated protein |
| ? | AM260480 | = 1888622 | 13 (0.430) | coding (284/1632 nt) | h16_B1677 | iron regulated protein | |||||
| * | ? | AM260480 | 1916064 = | 26 (0.770) | 5 (0.160) | 5/200 | 2.1 | 20.4% | coding (2538/9285 nt) | nrpA | Non‑ribosomal peptide synthetase |
| ? | AM260480 | 1916081 = | 15 (0.480) | coding (2521/9285 nt) | nrpA | Non‑ribosomal peptide synthetase | |||||
| * | ? | AM260480 | = 1916406 | 10 (0.300) | 4 (0.140) | 4/184 | 2.2 | 31.4% | coding (2196/9285 nt) | nrpA | Non‑ribosomal peptide synthetase |
| ? | AM260480 | = 1916390 | 9 (0.310) | coding (2212/9285 nt) | nrpA | Non‑ribosomal peptide synthetase | |||||
| * | ? | AM260480 | 2103317 = | 16 (0.480) | 6 (0.190) | 6/204 | 1.9 | 27.8% | coding (986/1368 nt) | czcC2 | Cobalt‑zinc‑cadmium resistance outer membrane porin |
| ? | AM260480 | 2103340 = | 16 (0.500) | coding (963/1368 nt) | czcC2 | Cobalt‑zinc‑cadmium resistance outer membrane porin | |||||
| * | ? | AM260480 | = 2332472 | 19 (0.560) | 5 (0.160) | 4/198 | 2.4 | 26.7% | coding (389/1311 nt) | h16_B2072 | MFS transporter |
| ? | AM260480 | = 2332503 | 10 (0.320) | coding (420/1311 nt) | h16_B2072 | MFS transporter | |||||
| * | ? | AM260480 | 2484484 = | 40 (1.190) | 9 (0.300) | 9/192 | 1.3 | 22.1% | intergenic (+24/+158) | gltB2/h16_B2195 | glutamate synthase [NADPH], Glutamate synthase amidotransferase domain/signal transduction histidine kinase containing CHASE2 sensor domain |
| ? | AM260480 | 2484526 = | 28 (0.940) | intergenic (+66/+116) | gltB2/h16_B2195 | glutamate synthase [NADPH], Glutamate synthase amidotransferase domain/signal transduction histidine kinase containing CHASE2 sensor domain | |||||
| * | ? | AM260480 | 2669628 = | 17 (0.510) | 4 (0.130) | 4/204 | 2.4 | 21.6% | coding (973/1020 nt) | h16_B2355 | conserved hypothetical protein |
| ? | AM260480 | 2669672 = | 13 (0.410) | coding (1017/1020 nt) | h16_B2355 | conserved hypothetical protein | |||||
| * | ? | AY305378 | 84810 = | 0 (0.000) | 33 (2.840) | 25/216 | 0.0 | 100% | coding (496/498 nt) | hoxW | [NiFe] hydrogenase (HoxH‑specific) C‑terminal protease |
| ? | AY305378 | = 94337 | NA (NA) | noncoding (1313/1313 nt) | ISAE1 | repeat region | |||||
| * | ? | AY305378 | 93025 = | NA (NA) | 6 (0.520) | 6/216 | 0.4 | 100% | noncoding (1/1313 nt) | ISAE1 | repeat region |
| ? | AY305378 | = 411561 | 0 (0.000) | coding (406/1008 nt) | nagM4 | putative NagM‑like protein | |||||
| * | ? | AY305378 | 280135 = | 5 (0.430) | 3 (0.290) | 3/194 | 0.7 | 36.4% | coding (152/1989 nt) | narX | transmembrane nitrate/nitrite sensor kinase |
| ? | AY305378 | 280249 = | 6 (0.570) | coding (266/1989 nt) | narX | transmembrane nitrate/nitrite sensor kinase | |||||