New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 91189	12 (0.450)	4 (0.160)	4/200	2.0	20.2%	coding (1186/1233 nt)	h16_A0075	MFS transporter, fosmidomycin resistance family
	?	AM260479	= 91229	20 (0.780)					coding (1226/1233 nt)	h16_A0075	MFS transporter, fosmidomycin resistance family

CTTCGGCATGGGCGGCATCGGCGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/91086‑91189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGCTGACGCTCGCGCAGGTCGGGCAGGAAGATCGTCAG  <  AM260479/91229‑91192                                                                                                                                                CTTCGGCATGGGCGGCATCGGCGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCCTGCTGACGCTCGCGCAGGTCGGGCAGG             >  2:179083/1‑131         TGGGCGGCATCGGCGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCCTGCTGACGCTCGCGCAGGTCGGGCAGGAAGATCGTCAG  <  1:179083/134‑1                                                                                   GCCTACCTGCCGCTGCTGGGCCCGCTGACGCTCGCGCAGGTCGGGC                >  1:928373/1‑46                                                                                   GCCTACCTGCCGCTGCTGGGCCCGCTGACGCTCGCGCAGGTCGGGC                <  2:928373/46‑1                                                                                                                                                CTTCGGCATGGGCGGCATCGGCGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/91086‑91189 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGCTGACGCTCGCGCAGGTCGGGCAGGAAGATCGTCAG  <  AM260479/91229‑91192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.