New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 91189	12 (0.450)	4 (0.160)	4/200	2.0	20.2%	coding (1186/1233 nt)	h16_A0075	MFS transporter, fosmidomycin resistance family
	?	AM260479	= 91229	20 (0.780)					coding (1226/1233 nt)	h16_A0075	MFS transporter, fosmidomycin resistance family

CGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTGCGCGCGTTCCGTCGCGGTCAGGTCCG  >  AM260479/91107‑91349                                                                                                                           |                                                                                                                         cgccgcGGTGCTGGGCGGCATGGCCGATACGCGTGGCAGCCGCGCGGTGTACGAGTACTGTGCCTACCGGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACt                                                                                                               <  1:870897/134‑1 (MQ=255)                                                              gCCTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGcagccagc                                                  >  2:424829/1‑134 (MQ=255)                                                              gCCTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGcagccagc                                                  >  2:107468/1‑134 (MQ=255)                                                              gCCTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGcagccagc                                                  >  2:1040438/1‑134 (MQ=255)                                                                cTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCgg                                                                                                       >  1:1127388/1‑79 (MQ=255)                                                                cTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCgg                                                                                                       <  2:1127388/79‑1 (MQ=255)                                                                cTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAgcgg                                                >  2:717211/1‑134 (MQ=255)                                                                                ggCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGcagcc                                 <  1:1040438/133‑1 (MQ=255)                                                                                      ctgACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCAggcccagcagcggcaggtaggcacagtactcgtacaccgcgcggatgccatgcgtatcggccatgccgcccagcaccgcggcgccgatgccgccca                          <  1:179083‑M2/134‑97 (MQ=255)                                                                                         aCGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCAt                                                                                                  >  2:195799/1‑59 (MQ=255)                                                                                         aCGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCAt                                                                                                  <  1:195799/59‑1 (MQ=255)                                                                                               ttCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCt                                                                    <  1:609546/83‑1 (MQ=255)                                                                                               ttCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCt                                                                    >  2:609546/1‑83 (MQ=255)                                                                                                 ccTGCCCGACCTGCGCGAGCGTCAGCAggcccagcagcggcaggtaggcacagtactcgtacaccgcgcggatgccatgcgtatcggccatgccgcccagcaccgcggcgccgatgccgcccatgccgaag                  >  2:179083‑M2/1‑27 (MQ=255)                                                                                                    gCCCGACCTGCGCGAGCGTCAGCGggcccagcagcggcaggtaggc                                                                                                    >  1:928373‑M2/1‑24 (MQ=255)                                                                                                    gCCCGACCTGCGCGAGCGTCAGCGggcccagcagcggcaggtaggc                                                                                                    <  2:928373‑M2/46‑23 (MQ=255)                                                                                                     cccGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTGCGCGCGTTCCGTcgc             <  1:717211/132‑1 (MQ=255)                                                                                                          ccTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTcgcc                                                                                        >  1:314052/1‑52 (MQ=255)                                                                                                          ccTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTcgcc                                                                                        <  2:314052/52‑1 (MQ=255)                                                                                                             gcgcGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTgcg                          >  1:848117/1‑111 (MQ=255)                                                                                                             gcgcGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTgcg                          <  2:848117/111‑1 (MQ=255)                                                                                                              cgcgAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTGCGCGCGTTCCGTCGCGGTCAGGTCCg  <  1:424829/134‑1 (MQ=255)                                                                                                                  aGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGcag                                                       <  1:596189/77‑1 (MQ=255)                                                                                                                  aGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGcag                                                       >  2:596189/1‑77 (MQ=255)                                                                                                                           |                                                                                                                         CGCCGCGGTGCTGGGCGGCATGGCCGATACGCATGGCATCCGCGCGGTGTACGAGTACTGTGCCTACCTGCCGCTGCTGGGCCTGCTGACGATCTTCCTGCCCGACCTGCGCGAGCGTCAGCGGGCCTGACACTCAGGCCGGTTCATTGCCTTCGCCGCCACCGCCCGGTGGCGGCTCGAACATGCGCAGCCAGCGGCGCAGCAGCGCAGCCAGCTGCGCGCGTTCCGTCGCGGTCAGGTCCG  >  AM260479/91107‑91349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.