New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	1601171 =	18 (0.670)	5 (0.190)	4/204	2.0	21.0%	coding (171/1194 nt)	h16_A1475	acetylornithine deacetylase/Succinyl‑diaminopimelate desuccinylase or related deacylas
	?	AM260479	1601191 =	20 (0.760)					coding (191/1194 nt)	h16_A1475	acetylornithine deacetylase/Succinyl‑diaminopimelate desuccinylase or related deacylas

CGCGTGACGATGCCCAGGTCGTCGAGCGTGCGCATGACTTCCAGGCCGGCCAGCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/1601305‑1601171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCCACCGGCAGCCATATCGACACCCAGCCCTCGGG  >  AM260479/1601191‑1601224                                                                                                                                                                           CGCGTGACGATGCCCAGGTCGTCGAGCGTGCGCATGACTTCCAGGCCGGCCAGCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGG                                     >  2:162981/1‑134       ACGATGCCCAGGTCGTCGAGCGTGCGCATGACTTCCAGGCCGGCCAGCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGGCCACC                               <  1:162981/134‑1                                                     GCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGGCCACCGGCAGCCATATCGACACCCAGCCCTCGGG  >  1:247084/1‑117                                                     GCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGGCCACCGGCAGCCATATCGACACCCAGCCCTCGGG  <  2:247084/117‑1                                                     GCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGGCCA                                 >  1:466002/1‑86                                                     GCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGGCCA                                 <  2:466002/86‑1                                                                                                                                                                           CGCGTGACGATGCCCAGGTCGTCGAGCGTGCGCATGACTTCCAGGCCGGCCAGCACGCCGAAGTTGCCGTCGAACTTGCCGCCCGAGGGCTGGGTGTCGATATGGCTGCCGGTGGCCACGGCGCGCGCGTCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/1601305‑1601171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCCACCGGCAGCCATATCGACACCCAGCCCTCGGG  >  AM260479/1601191‑1601224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.