New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3335368 =	17 (0.640)	4 (0.160)	4/194	1.9	20.1%	coding (994/1542 nt)	pcnB	Poly(A) polymerase
	?	AM260479	3335398 =	16 (0.640)					coding (1024/1542 nt)	pcnB	Poly(A) polymerase

GTCCAGCGCTGCAGCACGTGGTGCCACAGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3335402‑3335368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGC  >  AM260479/3335398‑3335499                                                                                                                                            GTCCAGCGCTGCGGCACGTGGTGCCACAGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACAC                                                      <  2:858843/85‑1 GTCCAGCGCTGCAGCACGTGGTGCCACAGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACAC                                                      >  1:858843/1‑85                          ACAGCAGCGCGGCGAACAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGC  >  1:503502/1‑113                          ACAGCAGCGCGGCGAACAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGC  <  2:503502/113‑1                             GCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTG                                                           >  1:425050/1‑52                             GCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTG                                                           <  2:425050/52‑1                                                                                                                                            GTCCAGCGCTGCAGCACGTGGTGCCACAGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3335402‑3335368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGC  >  AM260479/3335398‑3335499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.