New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3335368 =	17 (0.640)	4 (0.160)	4/194	1.9	20.1%	coding (994/1542 nt)	pcnB	Poly(A) polymerase
	?	AM260479	3335398 =	16 (0.640)					coding (1024/1542 nt)	pcnB	Poly(A) polymerase

AGCAGCCCATGGGCCAGCGCTTCGTGCAGCTGGCGCTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCACCGACATGC  >  AM260479/3335270‑3335518                                                                                                                                 |                                                                                                                          agcagcCCATGGGCCAGCGCTTCGTGCAGCTGGCGCTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GAcc                                                                                                                     <  1:1040521/134‑1 (MQ=255)         aTGGGCCAGCGCTTCGTGCAGCTGGCGCTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTgcg                                                                                                             >  2:859402/1‑134 (MQ=255)                              cTGGCGCTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCAt                                                                                        <  1:715078/134‑1 (MQ=255)                                  cgcTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAggg                                                                                                    >  2:369518/1‑118 (MQ=255)                                  cgcTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAggg                                                                                                    <  1:369518/118‑1 (MQ=255)                                                 gtgttcagcgcggcgatggcgtgctcgccctcctcgcgcagcctggtccaGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GAc                                                                                                                      >  1:858843‑M1/51‑85 (MQ=255)                                                 gtgttcagcgcggcgatggcgtgctcgccctcctcgcgcagcctggtccaGCGCTGCTGTGGCACCACGTGCCGCAGCGCTG‑GAc                                                                                                                      <  2:858843‑M1/35‑1 (MQ=255)                                                     ccgcGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATg                                                                  >  2:943942/1‑133 (MQ=255)                                                                           gTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGAc                                           >  2:164679/1‑134 (MQ=255)                                                                                gCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCg                                         <  1:164679/131‑1 (MQ=255)                                                                                              gtccagcgctgcggcacgtggtgccacagcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAacac                                                                         <  2:858843‑M2/50‑1 (MQ=255)                                                                                              gtccagcgctgcagcacgtggtgccacagcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAacac                                                                         >  1:858843‑M2/36‑85 (MQ=255)                                                                                                                 ccacGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCACCGACa     <  1:943942/134‑1 (MQ=255)                                                                                                                    cGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCACCGACATgc  <  1:579301/134‑1 (MQ=255)                                                                                                                     gTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     >  2:1044842/1‑114 (MQ=255)                                                                                                                     gTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     <  1:1044842/114‑1 (MQ=255)                                                                                                                       gctgcAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     <  2:947889/112‑1 (MQ=255)                                                                                                                       gctgcAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     >  1:947889/1‑112 (MQ=255)                                                                                                                       gctgcAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCAcc         >  1:908577/1‑124 (MQ=255)                                                                                                                       gctgcAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCAcc         <  2:908577/124‑1 (MQ=255)                                                                                                                       acagcagcgcGGCGAACAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     <  2:503502‑M2/103‑1 (MQ=255)                                                                                                                       acagcagcgcGGCGAACAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAgcgc                     >  1:503502‑M2/11‑113 (MQ=255)                                                                                                                          gcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTg                                                                              <  2:425050‑M2/45‑1 (MQ=255)                                                                                                                          gcagcgcTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTg                                                                              >  1:425050‑M2/8‑52 (MQ=255)                                                                                                                                 |                                                                                                                          AGCAGCCCATGGGCCAGCGCTTCGTGCAGCTGGCGCTGGACAACACCGACCGCCGCGTGCAGGCCGGCAAGCCGGTCTCGCCGGGCTTCCTGTTCGCCGCGCTGCTGTGGCACCACGTGCTGCAGCGCTG‑GACCAGGCTGCGCGAGGAGGGCGAGCACGCCATCGCCGCGCTGAACACCGCCATGGACATGGTGCTGGAAAAGCAGACCGGCCAGCTGGCGATCCAGCGCCGCTTTGTCACCGACATGC  >  AM260479/3335270‑3335518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.