| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3376140 | 3376151 | 12 | 9 [0] | [0] 9 | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3376152 = | 0 (0.000) | 7 (0.320) | 7/170 | 1.1 | 100% | coding (396/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| ? | AM260479 | = 3376139 | 0 (0.000) | coding (409/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) | |||||
CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3376302‑3376152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA < AM260479/3376139‑3376042 CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCC > 2:134838/1‑133 CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC < 1:1135345/134‑1 CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC < 1:454341/134‑1 CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGC > 2:454341/1‑133 GTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCG < 2:672711/133‑1 TGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCT > 1:300579/1‑133 GTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC < 1:186453/88‑1 GTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC > 2:186453/1‑88 ACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGTCGCCGTCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACC < 2:300579/134‑1 CAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCC > 1:764993/1‑134 AAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTC < 2:764993/134‑1 CTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGC < 1:134838/133‑1 GCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCC < 1:1179700/117‑1 GCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCC > 2:1179700/1‑117 CGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA < 1:99628/101‑1 CGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA > 2:99628/1‑101 CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/3376302‑3376152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA < AM260479/3376139‑3376042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |