Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260479 3,376,159 (CGGTGGCGCTCG)2→1 coding (378‑389/1146 nt) phcR ← signal transduction histidine kinase containing a receiver domain (hybrid)

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 3376140 3376151 12 9 [0] [0] 9 phcR signal transduction histidine kinase containing a receiver domain (hybrid)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3376152 =0 (0.000)7 (0.320) 7/170 1.1 100% coding (396/1146 nt) phcR signal transduction histidine kinase containing a receiver domain (hybrid)
?AM260479 = 3376139 0 (0.000)coding (409/1146 nt) phcR signal transduction histidine kinase containing a receiver domain (hybrid)

CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3376302‑3376152
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA  <  AM260479/3376139‑3376042
                                                                                                                                                                                                                                                         
CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCC                                                                                                                      >  2:134838/1‑133
      CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC                                                                                                               <  1:1135345/134‑1
      CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC                                                                                                               <  1:454341/134‑1
      CATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGC                                                                                                                >  2:454341/1‑133
             GTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCG                                                                                                         <  2:672711/133‑1
                                      TGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCT                                                                                >  1:300579/1‑133
                                                    GTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC                                                                                                               <  1:186453/88‑1
                                                    GTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCC                                                                                                               >  2:186453/1‑88
                                                        ACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGTCGCCGTCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACC                                                             <  2:300579/134‑1
                                                         CAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCC                                                            >  1:764993/1‑134
                                                                 AAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTC                                                    <  2:764993/134‑1
                                                                               CTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGC                                       <  1:134838/133‑1
                                                                                                                                  GCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCC    <  1:1179700/117‑1
                                                                                                                                  GCCGAGCGCCACCGCGAGCGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCC    >  2:1179700/1‑117
                                                                                                                                                    CGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA  <  1:99628/101‑1
                                                                                                                                                    CGCACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA  >  2:99628/1‑101
                                                                                                                                                                                                                                                         
CGTGCGCATCCTGGTCACCGCCTATGCCGACAAGGATGTGCTGCTGGAAACGGTCAACAGCGGCGAAGTCTTCCGCATCCTGGAAAAGCCGCTGAGCGTGGCCGACCTGCGCGAGGTGCTGGCAGGCGCCGCCGAGCGCCACCGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3376302‑3376152
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcgccaccgcgagcgcACCCTGCGCCAGCACCGGCTGATGGCGATCGACGAGACCCTGGCCTTCCTGGCGCATGAGCTGAATACCCCGCTGGCTGCCATCGCCAACTTTGCCCA  <  AM260479/3376139‑3376042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.