| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 3,376,159 | (CGGTGGCGCTCG)2→1 | coding (378‑389/1146 nt) | phcR ← | signal transduction histidine kinase containing a receiver domain (hybrid) |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 3376140 | 3376151 | 12 | 9 [0] | [0] 9 | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3376152 = | 0 (0.000) | 7 (0.320) | 7/170 | 1.1 | 100% | coding (396/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) |
| ? | AM260479 | = 3376139 | 0 (0.000) | coding (409/1146 nt) | phcR | signal transduction histidine kinase containing a receiver domain (hybrid) | |||||
TGGGCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTGCGCTCGCGGTGGCGCTCGCGGTGGCGCTCGGCGGCGCCTGCCAGCACCTCGCGCAGGTCGGCCACGCTCAGCGGCTTTTCCAGGATGCGGAAGACTTCGCCGCTGTTGACCG > AM260479/3376042‑3376252 | tGGGCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcg < 1:99628‑M2/101‑4 (MQ=255)tGGGCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcg > 2:99628‑M2/1‑98 (MQ=255) ggCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggc < 1:1179700‑M2/117‑22 (MQ=255) ggCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggc > 2:1179700‑M2/1‑96 (MQ=255) gCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggcggcgcctgccagcacctcgcgcaggtcggccacgctcagcggcttttccag < 1:134838‑M2/133‑73 (MQ=255) gAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggcggcgcctgccagcacctcgcgcaggtcggccacgctcagcggcttttccaggatgcggaagactt < 2:764993‑M2/134‑87 (MQ=255) gggTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggcggcgcctgccagcacctcgcgcaggtcggccacgctcagcggcttttccaggatgcggaagacttcgccgctg > 1:764993‑M2/1‑40 (MQ=255) ggTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcgacggcgactgccagcacctcgcgcaggtcggccacgctcagcggcttttccaggatgcggaagacttcgccgctgt < 2:300579‑M2/134‑96 (MQ=255) aGCCGGTGCTGGCGCAGGGTgcgctcgcggtggcgctcggcggcgcctgccagcacctcgcgcaggtcggccacgctcagcggcttttccaggatgcggaagacttcgccgctgttgaccgtttccagcagca > 1:300579‑M2/1‑20 (MQ=255) | TGGGCAAAGTTGGCGATGGCAGCCAGCGGGGTATTCAGCTCATGCGCCAGGAAGGCCAGGGTCTCGTCGATCGCCATCAGCCGGTGCTGGCGCAGGGTGCGCTCGCGGTGGCGCTCGCGGTGGCGCTCGGCGGCGCCTGCCAGCACCTCGCGCAGGTCGGCCACGCTCAGCGGCTTTTCCAGGATGCGGAAGACTTCGCCGCTGTTGACCG > AM260479/3376042‑3376252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |