New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1397431	27 (0.880)	9 (0.310)	7/196	1.6	25.6%	coding (743/783 nt)	h16_B1238	acid phosphatase
	?	AM260480	= 1397436	27 (0.940)					coding (738/783 nt)	h16_B1238	acid phosphatase

CCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1397315‑1397431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGGGTTA  <  AM260480/1397436‑1397356                                                                                                                                                                                                        CCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGC                                                                   >  1:913676/1‑133                                                                                GGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGG      <  1:704379/115‑1                                                                                GGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGG      >  2:230063/1‑115                                                                                GGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGG      >  2:704379/1‑115                                                                                GGGCGCCAGCGCCGCGCTCTCCGCCGGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGG      <  1:230063/115‑1                                                                                          GCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGGGTTA  >  1:414682/1‑109                                                                                          GCCGCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGGGTTA  <  2:414682/109‑1                                                                                             GCGCTCTCCGCGTGGCAGTCGCGCGCCCGTCGGGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCT              <  1:1166349/94‑1                                                                                             GCGCTCTCCGCCTGGCAGTCGCGCGCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCT              >  2:1166349/1‑94                                                                                                                                                                                                        CCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1397315‑1397431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgCCCGTCGCGCGACTGCCAGGCGGAGAGCGCGGCGCTGGCGCCCTGATCCACCAGGTGCCGGGGCCGGCTGCTGCAGGGTTA  <  AM260480/1397436‑1397356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.