New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1397431	27 (0.880)	9 (0.310)	7/196	1.6	25.6%	coding (743/783 nt)	h16_B1238	acid phosphatase
	?	AM260480	= 1397436	27 (0.940)					coding (738/783 nt)	h16_B1238	acid phosphatase

ACCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGCCGCGGCCATCATGCGGCCCTCG  >  AM260480/1397314‑1397553                                                                                                                           |                                                                                                                      aCCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCt                                                                                                            >  2:915888/1‑134 (MQ=255)      cgTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGgcgc                                                                                                       >  1:1047730/1‑134 (MQ=255)      cgTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGgcgc                                                                                                       >  1:973443/1‑134 (MQ=255)                      ggcACGGTTATCCCGGTGAAGTAACCCTGCAGCCGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTc                                                                                       >  2:218576/1‑134 (MQ=255)                       gcACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTcg                                                                                      <  2:308690/134‑1 (MQ=255)                         aCGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTcgcg                                                                                    <  2:356031/134‑1 (MQ=255)                            gTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 <  1:218576/134‑1 (MQ=255)                            gTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 <  2:1047730/134‑1 (MQ=255)                                      tGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTgcc                                                                                                  <  1:408706/107‑1 (MQ=255)                                      tGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTgcc                                                                                                  >  2:408706/1‑107 (MQ=255)                                      tGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 >  1:653991/1‑124 (MQ=255)                                      tGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 <  2:653991/124‑1 (MQ=255)                                         aGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 <  2:68470/121‑1 (MQ=255)                                         aGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCgcggcg                                                                                 >  1:68470/1‑121 (MQ=255)                                           tAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggc                                                                                           >  1:414682‑M2/1‑81 (MQ=255)                                           tAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggc                                                                                           <  2:414682‑M2/109‑29 (MQ=255)                                           tAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTc                                                                  <  1:915888/134‑1 (MQ=255)                                               ccTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgcccggcggagagcgcggcgctggcgccc                                                                                 <  1:230063‑M2/115‑39 (MQ=255)                                               ccTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggcgctggcgccc                                                                                 >  2:704379‑M2/1‑77 (MQ=255)                                               ccTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggcgctggcgccc                                                                                 >  2:230063‑M2/1‑77 (MQ=255)                                               ccTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggcgctggcgccc                                                                                 <  1:704379‑M2/115‑39 (MQ=255)                                                       agcCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgc                                                                                              >  2:1166349‑M2/1‑69 (MQ=255)                                                       agcCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCCCGACGGGcgcgcgactgccacgcggagagcgc                                                                                              <  1:1166349‑M2/94‑26 (MQ=255)                                                            gCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCg                                                                 >  1:942522/1‑118 (MQ=255)                                                            gCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCg                                                                 <  2:942522/118‑1 (MQ=255)                                                                                 gggCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGa                                                          >  2:318616/1‑104 (MQ=255)                                                                                 gggCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGa                                                          <  1:318616/104‑1 (MQ=255)                                                                                     gcCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGAGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGc                        <  2:973443/134‑1 (MQ=255)                                                                                                gcTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTgccgccgcc                                                                                            >  1:916458/1‑55 (MQ=255)                                                                                                gcTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTgccgccgcc                                                                                            <  2:916458/55‑1 (MQ=255)                                                                                                 ctctCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGCCGCGGCcatcat            <  2:492472/134‑1 (MQ=255)                                                                                                   ctcCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGcc                                     >  2:333690/1‑107 (MQ=255)                                                                                                   ctcCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGcc                                     <  1:333690/107‑1 (MQ=255)                                                                                                        ccTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGCCGCGGCCATCATGCGGccc     >  2:313330/1‑134 (MQ=255)                                                                                                         cTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGCCGCGGCCATCATGCGGCCCt    >  1:628128/1‑134 (MQ=255)                                                                                                            gCAGTCGCGCGACGGGcgcgcgactgccaggcggagagcgcggcgctggcgccctgatccaccaggtgccggggccggctgctgcagggttacttcaccgggataaccgtgccggccggcaccggcacggcgg  >  1:913676‑M2/1‑16 (MQ=255)                                                                                                                           |                                                                                                                      ACCGCCGTGCCGGTGCCGGCCGGCACGGTTATCCCGGTGAAGTAACCCTGCAGCAGCCGGCCCCGGCACCTGGTGGATCAGGGCGCCAGCGCCGCGCTCTCCGCCTGGCAGTCGCGCGACGGGCGCGCGCCGCTGGCGCGTGCCGCCGCCACTTCGCGGCGGGCGCGGTCCAGGTCGGCGCGGAAGGTGGGGTCGGCATGCAGCCGCGCCACCGTTGCCGCGGCCATCATGCGGCCCTCG  >  AM260480/1397314‑1397553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.