New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1877625 =17 (0.560)4 (0.150) 4/184 2.2 22.2% coding (216/732 nt) h16_B1666 chitooligosaccharide deacetylase
?AM260480 1877666 = 13 (0.480)coding (257/732 nt) h16_B1666 chitooligosaccharide deacetylase

CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1877758‑1877625
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgcgccgCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATCGGTGCC  >  AM260480/1877666‑1877790
                                                                                                                                                                                                                                                                   
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGCCG                                                                                                                               >  1:359578/1‑134
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGC                                                                                                                                 <  1:213328/132‑1
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGC                                                                                                                                 >  2:213328/1‑132
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCG                                                                                                                                        >  1:533103/1‑125
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCG                                                                                                                                        <  2:533103/125‑1
                    CGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGC                                                                                                                                 <  1:132298/112‑1
                    CGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGC                                                                                                                                 >  2:132298/1‑112
                                        CTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGC                                                                                                                                     <  1:732071/88‑1
                                        CTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGC                                                                                                                                     >  2:732071/1‑88
                                                                                              GGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAAC                                                                       >  1:966105/1‑96
                                                                                              GGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAAC                                                                       <  2:966105/96‑1
                                                                                                           ACGCAGAAGAAGGT‑‑CGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGG                          >  1:403829/1‑126
                                                                                                           ACGCAGAAGAAGGT‑‑CGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGG                          <  2:403829/126‑1
                                                                                                                       cgtcgGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATC        >  1:1172774/6‑134
                                                                                                                           CGCGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATAGGTG    >  2:957692/1‑134
                                                                                                                             CGCGCGCCGCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATCGGTGCC  >  1:967257/1‑134
                                                                                                                                                                                                                                                                   
CGAACACCGAGAAGTGCAGCCGGTGGTACATGCTGTGGTTCTCCACGGCGTGGCCGCGGCCGACGATCTCGCGCACCAGTTCCGGATGCGCCGCGGCGCGCGCGCCGACGCAGAAGAAGGTCGCGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1877758‑1877625
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgcgccgCGGCGCATCCGGAACTGGTGCGCGAGATCGTCGGCCGCGGCCACGCCGTGGAGAACCACAGCATGTACCACCGGCTGCACTTCTCGGTGTTCGGTCCCGGGCGCATGCTGCGCGACATCGGTGCC  >  AM260480/1877666‑1877790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.