New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	252673 =	12 (0.450)	4 (0.160)	4/198	2.0	27.2%	coding (121/1137 nt)	thiE	thiamine monophosphate synthase
	?	AM260479	252693 =	10 (0.390)					coding (141/1137 nt)	thiE	thiamine monophosphate synthase

GGCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGC  >  AM260479/252619‑252783                                                       |                                                                                                               ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCac                                                                                         >  1:794714/1‑78 (MQ=255) ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCac                                                                                         <  2:794714/78‑1 (MQ=255) ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgc                                 >  1:101109/1‑134 (MQ=255) ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgc                                 >  1:194376/1‑134 (MQ=255)   cGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgccg                               >  1:1006879/1‑134 (MQ=255)    gagaCCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgccgc                              >  2:108627/1‑134 (MQ=255)      gaCCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCgg                            <  2:194376/134‑1 (MQ=255)               cGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCgcgc                                                                                                       <  1:276895/50‑1 (MQ=255)               cGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCgcgc                                                                                                       >  2:276895/1‑50 (MQ=255)                         gcttcgccgtcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGgcgc                        <  1:960354‑M1/89‑1 (MQ=255)                         gcttcgccgtcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGgcgc                        >  2:960354‑M1/31‑119 (MQ=255)                                 gCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATcgc  <  2:1006879/133‑1 (MQ=255)                                  tcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccg                                  >  1:1048471‑M1/22‑100 (MQ=255)                                  tcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccg                                  <  2:1048471‑M1/79‑1 (MQ=255)                                         ggcgcctggcCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCg                                                             >  1:403814/1‑66 (MQ=255)                                         ggcgcctggcCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCg                                                             <  2:403814/66‑1 (MQ=255)                                                       |                                                                                                               GGCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGC  >  AM260479/252619‑252783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.