New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	252673 =	12 (0.450)	4 (0.160)	4/198	2.0	27.2%	coding (121/1137 nt)	thiE	thiamine monophosphate synthase
	?	AM260479	252693 =	10 (0.390)					coding (141/1137 nt)	thiE	thiamine monophosphate synthase

GTGCTGGAACACTATGGCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGCGAGGGCGGCCAGTGGATCGACACCGTG  >  AM260479/252604‑252810                                                                                          |                                                                                                                      gcgcccgcggcggcgacgcgcgcgatcgtgcctgcgtcggcttcgccgtcgaacagcagcacgtcgtgggcgccgggttgcgcgggcgcCCACGACGTGCTGCTGTTCGACGGCGAAGc                                                                                          <  1:960354‑M2/30‑1 (MQ=255) gcgcccgcggcggcgacgcgcgcgatcgtgcctgcgtcggcttcgccgtcgaacagcagcacgtcgtgggcgccgggttgcgcgggcgcCCACGACGTGCTGCTGTTCGACGGCGAAGc                                                                                          >  2:960354‑M2/90‑119 (MQ=255)           cggcgacgcgcgcgatcgtgcctgcgtcggcttcgccgtcgaacagcagcacgtcgtgggcgccgggttgcgcgggcgcCCACGACGTGCTGCTGTTCGa                                                                                                   >  1:1048471‑M2/80‑100 (MQ=255)           cggcgacgcgcgcgatcgtgcctgcgtcggcttcgccgtcgaacagcagcacgtcgtgggcgccgggttgcgcgggcgcCCACGACGTGCTGCTGTTCGa                                                                                                   <  2:1048471‑M2/21‑1 (MQ=255)                ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCac                                                                                                                    <  2:794714/78‑1 (MQ=255)                ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCac                                                                                                                    >  1:794714/1‑78 (MQ=255)                ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgc                                                            >  1:101109/1‑134 (MQ=255)                ggCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgc                                                            >  1:194376/1‑134 (MQ=255)                  cGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgccg                                                          >  1:1006879/1‑134 (MQ=255)                   gagaCCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccgccgc                                                         >  2:108627/1‑134 (MQ=255)                     gaCCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCgg                                                       <  2:194376/134‑1 (MQ=255)                                        gcttcgccgtcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGgcgc                                                   <  1:960354‑M1/89‑1 (MQ=255)                                        gcttcgccgtcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGgcgc                                                   >  2:960354‑M1/31‑119 (MQ=255)                                                gCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATcgc                             <  2:1006879/133‑1 (MQ=255)                                                 tcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccg                                                             <  2:1048471‑M1/79‑1 (MQ=255)                                                 tcgaacagcagcacgtcgtggGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTcgccg                                                             >  1:1048471‑M1/22‑100 (MQ=255)                                                        ggcgcctggcCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCg                                                                                        >  1:403814/1‑66 (MQ=255)                                                        ggcgcctggcCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCg                                                                                        <  2:403814/66‑1 (MQ=255)                                                                          CCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGCGAGGGCGGCCAGTGGATCGACACCGTg  >  1:108627‑M1/1‑134 (MQ=255)                                                                                          ccACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGCGAGggcgg                     >  1:11343/1‑99 (MQ=255)                                                                                          ccACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGCGAGggcgg                     <  2:11343/99‑1 (MQ=255)                                                                                          |                                                                                                                      GTGCTGGAACACTATGGCGAGACCTTCGGCGTCGATGACAAGCCGTGGCAGGCCTGGCGCCTGGCCGACGCGCCCGCGCAACCCGGCGCCCACGACGTGCTGCTGTTCGACGGCGAAGCCGACGCAGGCACGATCGCGCGCGTCGCCGCCGCGGGCGCCACGCTGATCGAGAGCGATCGCGAGGGCGGCCAGTGGATCGACACCGTG  >  AM260479/252604‑252810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.