New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	377822 =	12 (0.450)	3 (0.120)	3/192	2.2	26.0%	coding (90/1311 nt)	h16_A0359	ABC‑type transporter, periplasmic component: NitT family
	?	AM260479	377886 =	6 (0.240)					coding (26/1311 nt)	h16_A0359	ABC‑type transporter, periplasmic component: NitT family

GATAAAGCCGATGCGCACGTCGGTCTTCTCGGGCGCGTCCGAGCCCGCTGCCCACGCACCGGCGCGCACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCG  >  AM260479/377693‑377950                                                                                                                                  |                                                                                                                                 aacgcgggctgcgtcacgccacggacaacggcgtccctgcgccgcaccggtcttctggcgaagccggtcgcggaggggacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGCCgc                                                                                                                              >  2:487554‑M1/130‑134 (MQ=255)    gcgggctgcgtcacgccacggacaacggcgtccctgcgccgcaccggtcttctggcgaagccggtcgcggaggggacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGCCgctgc                                                                                                                           >  2:328211‑M1/127‑134 (MQ=255)               gcACGTCGGTCTTCTCGGGCGCGTCCGAGCCCGCTGCCCACGCACCGGCGCGCACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACg                                                                                                                <  2:383937/134‑1 (MQ=255)                                                              gcgcgcACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCtt                                                                 <  2:571868/134‑1 (MQ=255)                                                                   gtcgcggaggggacgccttttttcttggtgccatgcaatgccctctcgcctcaggattgccaaGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTgg                                                                                     >  1:549939‑M1/64‑109 (MQ=255)                                                                   gtcgcggaggggacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTgg                                                                                     <  2:549939‑M1/46‑1 (MQ=255)                                                                   cACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACg                                                                                        >  1:1152572/1‑106 (MQ=255)                                                                   cACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACg                                                                                        <  2:1152572/106‑1 (MQ=255)                                                                              gacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGCCgctg                                                                                                                            <  1:388108‑M1/7‑1 (MQ=255)                                                                              gacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGCCgctg                                                                                                                            >  2:388108‑M1/53‑59 (MQ=255)                                                                                  ccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGc                                                                                                                                 >  1:272591‑M1/49‑50 (MQ=255)                                                                                  ccttttttcttggagccatgcaatgccctctcgcctcaggattgccaaGc                                                                                                                                 <  2:272591‑M1/2‑1 (MQ=255)                                                                                    gCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTc                                                                                                           <  2:38599/70‑1 (MQ=255)                                                                                    gCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTc                                                                                                           >  1:38599/1‑70 (MQ=255)                                                                                    gCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCg                                                                                                          >  1:560329/1‑71 (MQ=255)                                                                                    gCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCg                                                                                                          <  2:560329/71‑1 (MQ=255)                                                                                                                      cgcgcgGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGaaaaa                      <  1:997694/121‑1 (MQ=255)                                                                                                                      cgcgcgGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGaaaaa                      >  2:997694/1‑121 (MQ=255)                                                                                                                          attgccaaGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGa     <  2:88159‑M1/126‑1 (MQ=255)                                                                                                                            gcggcggcCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGAcc   >  1:419993/1‑134 (MQ=255)                                                                                                                             cggcggcCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCg  <  2:419993/134‑1 (MQ=255)                                                                                                                                  |                                                                                                                                 GATAAAGCCGATGCGCACGTCGGTCTTCTCGGGCGCGTCCGAGCCCGCTGCCCACGCACCGGCGCGCACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCG  >  AM260479/377693‑377950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.