| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 377822 = | 12 (0.450) | 3 (0.120) | 3/192 | 2.2 | 26.0% | coding (90/1311 nt) | h16_A0359 | ABC‑type transporter, periplasmic component: NitT family |
| ? | AM260479 | 377886 = | 6 (0.240) | coding (26/1311 nt) | h16_A0359 | ABC‑type transporter, periplasmic component: NitT family | |||||
GCGCGCACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCGGCTTCGCCAGAAGACCGGTGCGGCGCAGGGACGCCGTTGTCCGTGGCGTGACGCAGCCCGCGTT > AM260479/377754‑378014 | gcgcgcACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCtt < 2:571868/134‑1 (MQ=255) tcgcggaggggacgccttttttcttggagccatgcaatgccctctcgcctcaggattgccaagccgctgcacgcagccgtccacgttcccgacgcggctgccgacgccgtgccggccagcagcggcTTGGCAAt < 2:88159‑M2/8‑1 (MQ=255) cgcgcgGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGaaaaa < 1:997694/121‑1 (MQ=255) cgcgcgGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGaaaaa > 2:997694/1‑121 (MQ=255) attgccaaGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGa < 2:88159‑M1/126‑1 (MQ=255) gcggcggcCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGAcc > 1:419993/1‑134 (MQ=255) cggcggcCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCg < 2:419993/134‑1 (MQ=255) ccacgttcccgacgcggctgccgacgccgtgccggccagcagcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGAc < 2:549939‑M2/63‑1 (MQ=255) ccacgttcccgacgcggctgccgacgccgtgccggccagcagcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCACCAAGAAAAAAGGCGTCCCCTCCGCGAc > 1:549939‑M2/47‑109 (MQ=255) aaCGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCGGCTTCGCCAGAAGACCGGTGCGGCGCAGGGACGCCGTTGTCCGt < 1:88159/134‑1 (MQ=255) gcagcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCGGCTTCGCCAGAAGACCGGTGCGGCGCAGGGACGCCGTTGTCCGTGGCGTGACGCAGCCcgc > 2:328211‑M2/9‑134 (MQ=255) cagcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTc < 1:388108‑M2/52‑1 (MQ=255) cagcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTc > 2:388108‑M2/8‑59 (MQ=255) gcggcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCGGCTTCGCCAGAAGACCGGTGCGGCGCAGGGACGCCGTTGTCCGTGGCGTGACGCAGCCCGCGtt > 2:487554‑M2/6‑134 (MQ=255) gcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAgg > 1:272591‑M2/3‑50 (MQ=255) gcTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAgg < 2:272591‑M2/48‑1 (MQ=255) | GCGCGCACCAGCGGATCGACCAGCGTCATCACGCTGGCGCCGGCGATGGTGGCAAGCGCGCGGCGGCGGCCGCTGCTGGCCGGCACGGCGTCGGCAGCCGCGTCGGGAACGTGGACGGCTGCGTGCAGCGGCTTGGCAATCCTGAGGCGAGAGGGCATTGCATGGCTCCAAGAAAAAAGGCGTCCCCTCCGCGACCGGCTTCGCCAGAAGACCGGTGCGGCGCAGGGACGCCGTTGTCCGTGGCGTGACGCAGCCCGCGTT > AM260479/377754‑378014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |