New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 475712	16 (0.600)	4 (0.150)	3/208	2.4	20.0%	coding (304/405 nt)	h16_A0451	conserved hypothetical protein
	?	AM260479	475718 =	16 (0.600)					coding (310/405 nt)	h16_A0451	conserved hypothetical protein

GTTTCCAGCTCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCCGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCATTGAGCCGGACC  >  AM260479/475605‑475821                                                                                                            |                                                                                                              gTTTCCAGCTCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       <  2:919287/132‑1 (MQ=255) gTTTCCAGCTAAAGGGCTAGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       <  1:1033550/132‑1 (MQ=255)  tttCCAGCTCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCgg                                                                                    >  2:498730/1‑134 (MQ=255)          tCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       <  2:846484/123‑1 (MQ=255)          tCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       >  1:846484/1‑123 (MQ=255)                gCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCg                                                                      >  2:118517/1‑134 (MQ=255)                  tCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGC‑GCCAccagcggcgccgg                                                                                                  >  1:699943‑M1/1‑90 (MQ=255)                  tCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGC‑GCCAccagcggcgccgg                                                                                                  <  2:699943‑M1/103‑14 (MQ=255)                                gACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGa                                                                                            >  2:225691/1‑96 (MQ=255)                                gACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGa                                                                                            <  1:225691/96‑1 (MQ=255)                                gACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       >  1:841483/1‑101 (MQ=255)                                gACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       <  2:841483/101‑1 (MQ=255)                                    gACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       <  1:251649/97‑1 (MQ=255)                                    gACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGc                                                                                       >  2:251649/1‑97 (MQ=255)                                    gACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGCCGCCGCTGCAGCGGC‑GCCAccagcggcggctgaatcgccggc                                                                                        >  1:719392‑M1/1‑72 (MQ=255)                                    gACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGCCGCCGCTGCAGCGGC‑GCCAccagcggcggctgaatcgccggc                                                                                        <  2:719392‑M1/95‑24 (MQ=255)                                                                            gcgcCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCCGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCAtt            >  1:418471/1‑132 (MQ=255)                                                                                     gtggCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCAGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCATTGAGCCGGAcc  <  1:118517/133‑1 (MQ=255)                                                                                                gCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCCGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCATTGAGcc       >  2:154380/1‑117 (MQ=255)                                                                                                gCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCCGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCATTGAGcc       <  1:154380/117‑1 (MQ=255)                                                                                                            |                                                                                                              GTTTCCAGCTCAAGGGCTCGGGCTGGTACGTGACCGACTTCCGCGGCGGCAGCGCCGGCACGCCGACAGCGACCGGCGCCGCTGGTGGCGCCGCTGCAGCGGCGGCCAGCACCCCGGCGGCGGCTGAATCGCCGGCCAGTCCTGCCTCGTCCGCTTCGGCCACGCCCGCGGCAGCCGGCGGCTGCGGCAGCGCCTGCGCCTGCCATTGAGCCGGACC  >  AM260479/475605‑475821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.