| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 837552 = | 41 (1.530) | 6 (0.240) | 6/198 | 1.5 | 13.6% | coding (1224/1290 nt) | dadA2 | D‑amino‑acid dehydrogenase |
| ? | AM260479 | 837583 = | 37 (1.450) | coding (1255/1290 nt) | dadA2 | D‑amino‑acid dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGGCCGGGCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTC > AM260479/837420‑837674 | gTGGGCCGGGCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg > 2:533805/1‑134 (MQ=255)gTGGGCCGGGCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg > 2:218560/1‑134 (MQ=255) tGGGCCGGGCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGc > 2:533090/1‑134 (MQ=255) gggCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCg > 1:247758/1‑134 (MQ=255) gcgcCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg < 2:617212/122‑1 (MQ=255) gcgcCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg > 1:617212/1‑122 (MQ=255) ggCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGgc > 2:970983/1‑134 (MQ=255) ggCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCT‑TGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg > 1:341387/1‑115 (MQ=255) ggCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCT‑TGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg < 2:341387/115‑1 (MQ=255) aCGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCg > 2:234099/1‑134 (MQ=255) cTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg > 2:452883/1‑133 (MQ=255) ccGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGc < 1:686763/134‑1 (MQ=255) ggCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtttt < 2:247758/134‑1 (MQ=255) ggTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg > 1:146031/1‑77 (MQ=255) ggTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTgg < 2:146031/77‑1 (MQ=255) cGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCt < 1:452883/134‑1 (MQ=255) aacacttgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGc > 1:58233‑M1/70‑80 (MQ=255) aacacttgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGc < 2:58233‑M1/11‑1 (MQ=255) ttgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgctttgacGGc > 2:871166‑M1/65‑67 (MQ=255) ttgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgctttgacGGc < 1:871166‑M1/3‑1 (MQ=255) tgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtt > 1:641825‑M1/64‑110 (MQ=255) tgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtt < 2:641825‑M1/47‑1 (MQ=255) gCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCt < 1:218560/133‑1 (MQ=255) tGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCAGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTc > 1:97730/1‑134 (MQ=255) gtggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGcc < 2:791110‑M1/4‑1 (MQ=255) gtggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGcc > 1:791110‑M1/59‑62 (MQ=255) gAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgctgc < 1:869052/114‑1 (MQ=255) gAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgctgc > 2:869052/1‑114 (MQ=255) tGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCg > 1:224442/1‑80 (MQ=255) tGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCg < 2:224442/80‑1 (MQ=255) ggCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAgc < 2:1106148/134‑1 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg > 1:1026255/1‑81 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg < 2:1026255/81‑1 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccg > 1:881242/1‑134 (MQ=255) cgcTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGc > 1:493254/1‑133 (MQ=255) gTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGtt < 1:234099/134‑1 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGtt > 1:519731/1‑123 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGtt < 2:519731/123‑1 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTAcc > 1:284994/1‑134 (MQ=255) aaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccgc > 1:68105‑M1/19‑107 (MQ=255) aaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccgc < 2:68105‑M1/89‑1 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTgg > 2:360252/1‑116 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTgg < 1:360252/116‑1 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGc > 2:1137229/1‑134 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 2:493254/134‑1 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 2:401854/134‑1 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 1:533090/134‑1 (MQ=255) cGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTa < 2:464033/122‑1 (MQ=255) cGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTa > 1:464033/1‑122 (MQ=255) ctgGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTc < 2:796128/73‑1 (MQ=255) ctgGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTc > 1:796128/1‑73 (MQ=255) | GTGGGCCGGGCTGCGCCCGGCCACGCCGGACGGCCTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTC > AM260479/837420‑837674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |