| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 837552 = | 41 (1.530) | 6 (0.240) | 6/198 | 1.5 | 13.6% | coding (1224/1290 nt) | dadA2 | D‑amino‑acid dehydrogenase |
| ? | AM260479 | 837583 = | 37 (1.450) | coding (1255/1290 nt) | dadA2 | D‑amino‑acid dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGAAACATGCCTCAATGACCA > AM260479/837454‑837716 | cTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg > 2:452883/1‑133 (MQ=255) ccGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGc < 1:686763/134‑1 (MQ=255) ggCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtttt < 2:247758/134‑1 (MQ=255) cGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCt < 1:452883/134‑1 (MQ=255) tgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtt < 2:641825‑M1/47‑1 (MQ=255) tgcctgcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGAtt > 1:641825‑M1/64‑110 (MQ=255) gCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCt < 1:218560/133‑1 (MQ=255) tGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCAGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTc > 1:97730/1‑134 (MQ=255) gcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacggccggacggcgccctgccagccggtcggccGTCGAAGCAGAGGAtttt < 2:68105‑M2/18‑1 (MQ=255) gcggcgctagcgggacaggacgttaggcgcacgcagcatcaaaatcctctgcttcgacggccggacggcgccctgccagccggtcggccGTCGAAGCAGAGGAtttt > 1:68105‑M2/90‑107 (MQ=255) gAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgctgc > 2:869052/1‑114 (MQ=255) gAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgctgc < 1:869052/114‑1 (MQ=255) ggCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAgc < 2:1106148/134‑1 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg > 1:1026255/1‑81 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCg < 2:1026255/81‑1 (MQ=255) aTGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccg > 1:881242/1‑134 (MQ=255) cgcTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGc > 1:493254/1‑133 (MQ=255) gTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGtt < 1:234099/134‑1 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGtt < 2:519731/123‑1 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGtt > 1:519731/1‑123 (MQ=255) tGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTAcc > 1:284994/1‑134 (MQ=255) aaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccgc > 1:68105‑M1/19‑107 (MQ=255) aaaatcctctgcttcgacGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGcgccgc < 2:68105‑M1/89‑1 (MQ=255) aatcctctgcttcgacggccggacggcgccctgccagccggtcggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCa > 1:641825‑M2/48‑110 (MQ=255) aatcctctgcttcgacggccggacggcgccctgccagccggtcggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCa < 2:641825‑M2/63‑1 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTgg < 1:360252/116‑1 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTgg > 2:360252/1‑116 (MQ=255) aGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGc > 2:1137229/1‑134 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 1:533090/134‑1 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 2:401854/134‑1 (MQ=255) gcCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTc < 2:493254/134‑1 (MQ=255) cGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTa > 1:464033/1‑122 (MQ=255) cGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTa < 2:464033/122‑1 (MQ=255) ctgGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTc > 1:796128/1‑73 (MQ=255) ctgGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTc < 2:796128/73‑1 (MQ=255) GCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTACGTCCGCAAGCCac > 1:533805‑M1/1‑132 (MQ=255) ggCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTc < 2:1138550/134‑1 (MQ=255) cTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgc < 1:592755/44‑1 (MQ=255) cTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgc > 2:592755/1‑44 (MQ=255) gCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCAc < 2:284994/132‑1 (MQ=255) cAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGaa < 1:1137229/134‑1 (MQ=255) cAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGaa < 1:970983/134‑1 (MQ=255) aGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgc < 2:187557/39‑1 (MQ=255) aGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGAtgc > 1:187557/1‑39 (MQ=255) gccggtcggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGtt < 2:58233‑M2/69‑1 (MQ=255) gccggtcggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGtt > 1:58233‑M2/12‑80 (MQ=255) gTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGAAACATGCCt > 1:855371/1‑133 (MQ=255) gTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGAAACATGCCt > 2:940503/1‑133 (MQ=255) ggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTagcgccac > 1:791110‑M2/5‑60 (MQ=255) ggccGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTagcgccac < 2:791110‑M2/58‑3 (MQ=255) gccGTCAAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCaa < 1:871166‑M2/64‑1 (MQ=255) gccGTCAAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCaa > 2:871166‑M2/4‑67 (MQ=255) gTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGAAACATGCCTCAATGACCa < 2:39962/134‑1 (MQ=255) | CTGCCGCTGGTGGGGCCGTCGCGGGTGTCCGGGCTATGGCTGAACCTGGGCCATGGCGCGCTCGGTTTTACGCTGGCGATGGGCAGCGCCGGCCTGCTGGCCGACCGGCTGGCAGGGCGCCGTCCGGCCGTCGAAGCAGAGGATTTTGATGCTGCGTGCGCCTAACGTCCTGTCCCGCTAGCGCCGCAGGCAAGTGTTGGTTCATGCCGTACCCGTGCGTCCGCAAGCCACGACGCCGTCCACGAAACATGCCTCAATGACCA > AM260479/837454‑837716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |