| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 20 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 13 (0.690) | 10/130 | 0.6 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAAC > AM260480/1‑105 | accgccaggcgctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCAcc < 1:349795‑M1/12‑1 (MQ=255)accgccaggcgctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCAc < 2:119425‑M1/11‑1 (MQ=255)accgccaggcgctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCAc > 1:119425‑M1/123‑133 (MQ=255) catgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGcc < 1:962343‑M1/40‑1 (MQ=255) tgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTc < 2:64794‑M1/42‑1 (MQ=255) catgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAg > 2:962343‑M1/89‑134 (MQ=255) gcaaggccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAAt > 1:1176345‑M1/85‑134 (MQ=255) gccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:730458‑M1/80‑134 (MQ=255) cctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTgg > 1:64794‑M1/67‑134 (MQ=255) cagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa > 2:1172857‑M1/31‑53 (MQ=255) cagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa < 1:1172857‑M1/23‑1 (MQ=255) gccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGaaa < 2:910623‑M1/104‑1 (MQ=255) gccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGaaa < 1:1003149‑M1/104‑1 (MQ=255) ccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAAc > 2:1003149‑M1/28‑132 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCt > 1:360897‑M1/19‑59 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCt < 2:360897‑M1/41‑1 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:860635‑M1/19‑73 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 2:860635‑M1/55‑1 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGc < 1:745324‑M1/39‑1 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGc > 2:745324‑M1/14‑52 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAAC > AM260480/1‑105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |