| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 20 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 13 (0.690) | 10/130 | 0.6 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
ACCGCCAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912330‑2912490 | aCCGCCAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcacc < 1:349795‑M2/134‑13 (MQ=255)aCCGCCAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcac < 2:119425‑M2/133‑12 (MQ=255)aCCGCCAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcac > 1:119425‑M2/1‑122 (MQ=255) catgcccatgccGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcc < 1:962343‑M2/134‑41 (MQ=255) tgcccatgccGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctc < 2:64794‑M2/134‑43 (MQ=255) catgccGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcag > 2:962343‑M2/1‑88 (MQ=255) gcaaggccagccgGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaat > 1:1176345‑M2/6‑84 (MQ=255) gccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:730458‑M2/1‑79 (MQ=255) ccTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctgg > 1:64794‑M2/1‑66 (MQ=255) cAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca > 2:1172857‑M2/1‑30 (MQ=255) cAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca < 1:1172857‑M2/53‑24 (MQ=255) gCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaa < 2:910623‑M2/132‑105 (MQ=255) gCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaa < 1:1003149‑M2/132‑105 (MQ=255) ccTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaac > 2:1003149‑M2/1‑27 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:860635‑M2/1‑18 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 2:860635‑M2/73‑56 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcct > 1:360897‑M2/1‑18 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcct < 2:360897‑M2/59‑42 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagc < 1:745324‑M2/52‑40 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagc > 2:745324‑M2/1‑13 (MQ=255) | ACCGCCAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912330‑2912490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |