New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 83417123 (0.750)4 (0.180) 4/156 1.9 20.4% intergenic (+43/‑242) h16_B0739/h16_B0740 flavodoxin reductase (ferredoxin‑NADPH reductase) family 1/MFS transporter, AAHS family
?AM260480 = 834145 14 (0.610)intergenic (+17/‑268) h16_B0739/h16_B0740 flavodoxin reductase (ferredoxin‑NADPH reductase) family 1/MFS transporter, AAHS family

GCGAGCGCGCCAGCAACAAGACCATGATGGTGTGCGTGTCGGGGTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTCCCCCGGCCCCTCTCCCG  >  AM260480/834052‑834301
                                                                                                                       |                                                                                                                                  
gcgagcgCGCCAGCAACAAGACCATGATGGTGTGCGTGTCGGGGTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGcc                                                                                                                      <  1:46214/134‑1 (MQ=255)
       cgcCAGCAACAAGACCATGATGGTGTGCGTGTCGGGGTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGG                                                                                                                                    >  2:405876‑M1/1‑113 (MQ=255)
                                        ggggTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGagaacacaatc                                                                                                                         <  2:960432‑M1/91‑12 (MQ=255)
                                         gggTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGc                                                                                                                                   >  2:569936/1‑80 (MQ=255)
                                         gggTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGc                                                                                                                                   <  1:569936/80‑1 (MQ=255)
                                         gggTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACt                                                                                >  2:540766/1‑131 (MQ=255)
                                         gggTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACt                                                                                <  1:540766/131‑1 (MQ=255)
                                            tGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgaca                                                                          >  1:1007880‑M1/1‑76 (MQ=255)
                                              cAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgacacg                                                                        >  2:303301‑M1/1‑74 (MQ=255)
                                                   gcagcaAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAgg                                                                   >  1:137171/1‑134 (MQ=255)
                                                          gCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATc                                                                                      >  2:698315/1‑108 (MQ=255)
                                                          gCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATc                                                                                      <  1:698315/108‑1 (MQ=255)
                                                             ggTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGcc                                                                                                                      >  1:963011/1‑73 (MQ=255)
                                                             ggTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGcc                                                                                                                      <  2:963011/73‑1 (MQ=255)
                                                                    gACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCcgcg                                                  <  1:811179/134‑1 (MQ=255)
                                                                             tttCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGcc                                         >  2:20476/1‑134 (MQ=255)
                                                                                   gATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcacccc                                                                              <  1:960432‑M1/91‑55 (MQ=255)
                                                                                    aTTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGtt                                      >  1:695478/1‑130 (MQ=255)
                                                                                    aTTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGtt                                      <  2:695478/130‑1 (MQ=255)
                                                                                              ccccTCTCCCGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgacacgcacaccatcatggtcttgttgctggcg                                             >  1:405876‑M1/1‑26 (MQ=255)
                                                                                               cccTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCtt                                                                         >  1:134428/1‑84 (MQ=255)
                                                                                               cccTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCtt                                                                         <  2:134428/84‑1 (MQ=255)
                                                                                                   ctcCCGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccag                                                                                                       <  1:454613‑M1/50‑30 (MQ=255)
                                                                                                    tcCCGCGCGCGGGAGAGGGGagaacacaatcgcgcaattacaagtccagcaccagcttgctgcccttgcaccccgacacgcacacaatcatggtcttgttgctggcgcgctcgctgttgctgagcacgctgtcg                  >  2:1183186‑M1/1‑20 (MQ=255)
                                                                                                     cccGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgacacgcacaccatcatggtcttgttgctggcgcgctcgctgttgctgagcacgctgtcgc                 >  1:999191‑M1/1‑19 (MQ=255)
                                                                                                     cccGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTccc                 >  1:132859/1‑134 (MQ=255)
                                                                                                      ccGCGCGCGGGAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgacacgcacaccatcatggtcttgttgctggcgcgctcgctgttgctgagcacgctgtcgc                 <  2:1007880‑M1/133‑116 (MQ=255)
                                                                                                            gcgGGAGAGGGGagaacacaatcgcgaaattacaagtcca                                                                                                        >  1:752159‑M1/1‑12 (MQ=255)
                                                                                                               ggAGAGGGGagaacacaatcgcgaaattacaagtccagcaccagc                                                                                                <  1:26974‑M1/45‑37 (MQ=255)
                                                                                                               ggAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGtgcc                            <  2:383481/113‑1 (MQ=255)
                                                                                                               ggAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGtgcc                            >  1:383481/1‑113 (MQ=255)
                                                                                                                gagaGGCGCGGGAGAGAGGGCCAGCACACGCCGTAGCCGATGCGATGTCGAATCCCGACTGGCTCTTCCCATGCCGCCTGGCAAGCCGCGGCATCTGCCGTTAGCAATTGCCTGCCCTCTCCCTCGGCCCctcc      <  2:239930/134‑2 (MQ=255)
                                                                                                                 agagGGGagaacacaatcgcgaaattacaagtccagcaccagcttgctgcccttgcaccccgacacgcacaccatcatggtcttgttgctggcg                                             <  2:1132839‑M1/94‑88 (MQ=255)
                                                                                                                  gagGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTCCCCCGGCCCCTCTcc    <  1:585623/134‑1 (MQ=255)
                                                                                                                  gagGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTCCCCCGGCCCCTCTcc    >  1:710658/1‑134 (MQ=255)
                                                                                                                    ggggCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTCCCCCGGCCCCTCTCCCg  <  2:132859/134‑1 (MQ=255)
                                                                                                                       |                                                                                                                                  
GCGAGCGCGCCAGCAACAAGACCATGATGGTGTGCGTGTCGGGGTGCAAGGGCAGCAAGCTGGTGCTGGACTTGTAATTTCGCGATTGTGTTCTCCCCTCTCCCGCGCGCGGGAGAGGGGCGGGAGAGAGGGCCAGCGCACGCCGTAGCCGATGCGCTGTCGAATCCCGACTGCCTCTTCCCAGGCCGCCGGGCAAGCCGCGGCATCTGCCGTTATCAAGTGCCTGCCCTCTCCCCCGGCCCCTCTCCCG  >  AM260480/834052‑834301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.