| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 335,538 | Δ778 bp | [nagA]–[nagB] | [nagA], [nagB] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 335538 | 336315 | 778 | 12 [0] | [0] 12 | [nagA]–[nagB] | [nagA],[nagB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 335537 | 0 (0.000) | 9 (0.370) | 9/190 | 1.0 | 100% | coding (912/1104 nt) | nagA | N‑Acetylglucosamine‑6‑phosphate deacetylase |
| ? | AM260479 | 336316 = | 0 (0.000) | coding (595/1032 nt) | nagB | Glucosamine‑6‑phosphate deaminase | |||||
GCTGGTGGGGCATCTCGAGGCCGCACGCAGCGGCGAGCACGAACTGGTCGATGCCTGCGCAGGCTTGCCGGCCGCGCTGGCGCAAGCGGCCGCGCAGGACTGGTCGGCGCTGGTGCCAGCGCTGCGCGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCGCTCAAGCTCAAGGAGACCTCCGGCATCCAGGCCGAGGCTTTCTCCGGCGCCGAAGTGCGGCATGGCCCGA > AM260479/336189‑336448 | cgccgcgggcatgccggacggcgtgtaccacctgggcagccagaccgtctacaaggtccacggcagcgtgcgcctggccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCg < 2:465309‑M2/7‑1 (MQ=255) taccacctgggcagccagaccgtctacaaggtccacggcagcgtgcgcctggccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCcgcgg > 1:88601‑M2/103‑134 (MQ=255) gcagccagaccgtctacaaggtccacggcagcgtgcgcctggccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTg > 1:927434‑M2/93‑134 (MQ=255) ggtccacggcagcgtgcgcctggccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAgcgg < 2:88601‑M2/61‑1 (MQ=255) ccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGa < 1:703837‑M2/2‑1 (MQ=255) ccgatggcacgctggccggcagcgtgctgaccatggaccaggcgctgcgcGa > 2:703837‑M2/51‑52 (MQ=255) acgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCgctcaagct < 1:579030‑M2/71‑1 (MQ=255) acgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCgctcaagct > 2:579030‑M2/43‑113 (MQ=255) acgctggccggcagcgtgctgaccatggaccaggcgctgcgcGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCGCTCAAGCTCAAGGAGACCTCCGGCATCCa < 2:927434‑M2/92‑1 (MQ=255) ctgcgcGACGTCGAGCGCATGATCGTGCTGGGCcgcgg < 1:498739‑M2/32‑1 (MQ=255) ctgcgcGACGTCGAGCGCATGATCGTGCTGGGCcgcgg > 2:498739‑M2/7‑38 (MQ=255) cGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCGCTCAAGCTCAAGGAGACCTCCGGCATCCAGGCCGAGGCTTTCTCCGGCGCCGAAGTGCGGCATGGCCCGa > 1:256057‑M2/2‑134 (MQ=255) | GCTGGTGGGGCATCTCGAGGCCGCACGCAGCGGCGAGCACGAACTGGTCGATGCCTGCGCAGGCTTGCCGGCCGCGCTGGCGCAAGCGGCCGCGCAGGACTGGTCGGCGCTGGTGCCAGCGCTGCGCGACGTCGAGCGCATGATCGTGCTGGGCCGCGGCGCGGGCCTGGCGATCGCGCAGGAAGCGGCGCTCAAGCTCAAGGAGACCTCCGGCATCCAGGCCGAGGCTTTCTCCGGCGCCGAAGTGCGGCATGGCCCGA > AM260479/336189‑336448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |