| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 335,538 | Δ778 bp | [nagA]–[nagB] | [nagA], [nagB] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 335538 | 336315 | 778 | 12 [0] | [0] 12 | [nagA]–[nagB] | [nagA],[nagB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 335537 | 0 (0.000) | 9 (0.370) | 9/190 | 1.0 | 100% | coding (912/1104 nt) | nagA | N‑Acetylglucosamine‑6‑phosphate deacetylase |
| ? | AM260479 | 336316 = | 0 (0.000) | coding (595/1032 nt) | nagB | Glucosamine‑6‑phosphate deaminase | |||||
CGCCGCGGGCATGCCGGACGGCGTGTACCACCTGGGCAGCCAGACCGTCTACAAGGTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCAACTTCGTGTCGATCGGGCTGGACCTCGCCGATGCGTCGCGGCGCGTTTCGCTGTATCCGGCCCAGTACCTGGGCATGTCCGACCGCGGCATGCTGGCACAGGGCTGCTGGGCCGACGCGGTCGTGCTGGACC > AM260479/335411‑335670 | cgccgcGGGCATGCCGGACGGCGTGTACCACCTGGGCAGCCAGACCGTCTACAAGGTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcg < 2:465309‑M1/134‑8 (MQ=255) tACCACCTGGGCAGCCAGACCGTCTACAAGGTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcgg > 1:88601‑M1/1‑102 (MQ=255) gCAGCCAGACCGTCTACAAGGTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctg > 1:927434‑M1/1‑92 (MQ=255) ggTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctggcgatcgcgcaggaagcgg < 2:88601‑M1/134‑62 (MQ=255) ccGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCga < 1:703837‑M1/52‑3 (MQ=255) ccGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCga > 2:703837‑M1/1‑50 (MQ=255) aCGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctggcgatcgcgcaggaagcggcgctcaagctcaaggagacctccggcatcca < 2:927434‑M1/134‑93 (MQ=255) aCGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctggcgatcgcgcaggaagcggcgctcaagct < 1:579030‑M1/113‑72 (MQ=255) aCGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctggcgatcgcgcaggaagcggcgctcaagct > 2:579030‑M1/1‑42 (MQ=255) cTGCGCgacgtcgagcgcatgatcgtgctgggccgcgg < 1:498739‑M1/38‑33 (MQ=255) cTGCGCgacgtcgagcgcatgatcgtgctgggccgcgg > 2:498739‑M1/1‑6 (MQ=255) cgacgtcgagcgcatgatcgtgctgggccgcggcgcgggcctggcgatcgcgcaggaagcggcgctcaagctcaaggagacctccggcatccaggccgaggctttctccggcgccgaagtgcggcatggcccga > 1:256057‑M1/1‑1 (MQ=255) | CGCCGCGGGCATGCCGGACGGCGTGTACCACCTGGGCAGCCAGACCGTCTACAAGGTCCACGGCAGCGTGCGCCTGGCCGATGGCACGCTGGCCGGCAGCGTGCTGACCATGGACCAGGCGCTGCGCAACTTCGTGTCGATCGGGCTGGACCTCGCCGATGCGTCGCGGCGCGTTTCGCTGTATCCGGCCCAGTACCTGGGCATGTCCGACCGCGGCATGCTGGCACAGGGCTGCTGGGCCGACGCGGTCGTGCTGGACC > AM260479/335411‑335670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |